Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 4.1e-49 197.6 89 100.0
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 2.2e-47 191.8 89 96.6
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 8.5e-47 189.9 89 95.5
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 8.5e-47 189.9 89 95.5
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 1.1e-46 189.5 89 95.5
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 4.2e-46 187.6 89 94.4
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.2e-45 186.0 89 92.1
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 4.7e-45 184.1 89 92.1
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 1.1e-43 179.5 89 92.1
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 1.1e-43 179.5 89 92.1
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.1e-41 172.9 91 86.8
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 1.4e-41 172.6 89 89.9
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 2.4e-41 171.8 88 89.8
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 2.4e-41 171.8 88 89.8
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 5.3e-41 170.6 87 89.7
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 1.3e-39 166.0 89 85.4
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.3e-39 166.0 83 89.2
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 1.7e-39 165.6 87 88.5
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.7e-39 165.6 86 87.2
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.7e-39 165.6 86 87.2
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.7e-39 165.6 86 87.2
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.7e-39 165.6 85 88.2
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 2.9e-39 164.9 86 88.4
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 5.0e-39 164.1 83 89.2
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 5.0e-39 164.1 89 86.5
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 5.0e-39 164.1 89 86.5
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 1.4e-38 162.5 90 81.1
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 1.4e-38 162.5 90 81.1
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.4e-38 162.5 87 85.1
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.4e-38 162.5 83 88.0
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 2.5e-38 161.8 83 88.0
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 4.2e-38 161.0 83 88.0
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.5e-38 160.6 82 86.6
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.2e-37 159.5 84 84.5
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.1e-37 158.7 82 85.4
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 2.7e-37 158.3 83 86.7
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 4.7e-37 157.5 84 84.5
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 6.1e-37 157.1 83 86.7
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 6.1e-37 157.1 83 86.7
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 8.0e-37 156.8 81 84.0
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 8.0e-37 156.8 82 82.9
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 8.0e-37 156.8 82 82.9
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 1.0e-36 156.4 81 84.0
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 1.0e-36 156.4 86 84.9
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 1.4e-36 156.0 82 81.7
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 1.8e-36 155.6 91 81.3
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 2.3e-36 155.2 82 81.7
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 2.3e-36 155.2 81 86.4
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.0e-36 154.8 83 85.5
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 3.9e-36 154.5 87 81.6
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 5.2e-36 154.1 83 84.3
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 6.7e-36 153.7 82 79.3
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 8.8e-36 153.3 82 81.7
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 8.8e-36 153.3 83 83.1
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 1.5e-35 152.5 83 80.7
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 2.0e-35 152.1 82 82.9
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.0e-35 152.1 87 80.5
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 2.6e-35 151.8 81 84.0
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 2.6e-35 151.8 88 81.8
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 3.3e-35 151.4 84 78.6
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 3.3e-35 151.4 84 78.6
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 5.7e-35 150.6 79 81.0
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 5.7e-35 150.6 82 82.9
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.7e-35 150.6 84 81.0
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 5.7e-35 150.6 82 81.7
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 7.4e-35 150.2 82 82.9
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 7.4e-35 150.2 82 79.3
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 9.7e-35 149.8 87 78.2
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 9.7e-35 149.8 85 77.6
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.3e-34 149.4 84 78.6
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.3e-34 149.4 81 80.2
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 1.3e-34 149.4 82 81.7
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.7e-34 149.1 84 78.6
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 1.7e-34 149.1 87 80.5
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 2.2e-34 148.7 84 78.6
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.2e-34 148.7 81 79.0
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.2e-34 148.7 81 79.0
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 2.8e-34 148.3 85 80.0
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 2.8e-34 148.3 81 76.5
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 3.7e-34 147.9 85 77.6
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 4.8e-34 147.5 82 81.7
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 4.8e-34 147.5 74 87.8
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 4.8e-34 147.5 77 83.1
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 6.3e-34 147.1 81 79.0
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 6.3e-34 147.1 81 79.0
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 8.2e-34 146.7 89 79.8
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.4e-33 146.0 82 80.5
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.4e-33 146.0 85 77.6
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.4e-33 146.0 81 80.2
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 1.8e-33 145.6 84 77.4
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 2.4e-33 145.2 82 76.8
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 2.4e-33 145.2 81 77.8
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 2.4e-33 145.2 81 77.8
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 2.4e-33 145.2 81 77.8
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.1e-33 144.8 81 77.8
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 3.1e-33 144.8 80 78.8
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 7.0e-33 143.7 86 76.7
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 7.0e-33 143.7 85 75.3
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.6e-32 142.5 82 76.8
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 2.0e-32 142.1 81 76.5
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 7.7e-32 140.2 82 74.4
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 3.8e-31 137.9 84 76.2
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.5e-30 136.0 80 73.8
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 1.5e-30 136.0 77 76.6
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.5e-30 135.2 80 73.8
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 2.5e-30 135.2 84 75.0
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 1.8e-28 129.0 74 71.6
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 4.4e-27 124.4 94 60.6
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 1.3e-26 122.9 61 83.6
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 8.3e-26 120.2 61 82.0
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 5.3e-25 117.5 59 89.8
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 1.6e-24 115.9 151 41.7
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 3.8e-23 111.3 63 81.0
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 6.5e-23 110.5 62 82.3
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 1.9e-22 109.0 69 62.3
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 3.2e-22 108.2 60 81.7
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 5.5e-22 107.5 82 61.0
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 7.2e-22 107.1 59 83.1
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 7.2e-22 107.1 59 83.1
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 7.2e-22 107.1 60 85.0
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 8.0e-21 103.6 81 63.0
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.0e-20 103.2 66 75.8
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 1.0e-20 103.2 57 80.7
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.4e-20 102.8 61 75.4
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 1.8e-20 102.4 59 83.1
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 5.2e-20 100.9 61 78.7
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 6.8e-20 100.5 51 88.2
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 8.8e-20 100.1 59 76.3
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.2e-19 99.8 63 76.2
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 1.2e-19 99.8 60 78.3
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.4e-19 98.2 59 72.9
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 5.7e-19 97.4 60 73.3
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 5.7e-19 97.4 57 82.5
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 5.7e-19 97.4 57 82.5
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 1.3e-18 96.3 76 59.2
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 1.3e-18 96.3 61 75.4
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 2.2e-18 95.5 60 73.3
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 9.1e-17 90.1 61 68.9
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 4.5e-16 87.8 60 65.0
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 5.9e-16 87.4 59 67.8
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.5e-14 82.0 58 63.8
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-13 79.0 39 87.2
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.8e-13 78.6 61 60.7
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 1.0e-12 76.6 71 56.3
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 6.8e-12 73.9 61 52.5


User provided reference genes

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