Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G52680 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 2.3e-238 828.6 429 100.0
AT4G00770 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 2.5e-197 692.2 425 86.4
Carub.0006s3643 Capsella rubella HOM05D002977 ORTHO05D003225 7.6e-194 680.6 427 83.4
Sp6g00770 Schrenkiella parvula HOM05D002977 ORTHO05D003225 2.2e-180 636.0 430 77.9
CARHR248960 Cardamine hirsuta HOM05D002977 ORTHO05D003225 8.5e-177 624.0 430 78.6
Thhalv10029270m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 7.0e-171 604.4 435 77.9
A03p32000 Brassica napus HOM05D002977 ORTHO05D003225 6.8e-150 534.6 429 71.3
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 1.5e-149 533.5 431 70.5
C03p39020 Brassica napus HOM05D002977 ORTHO05D003225 6.3e-148 528.1 431 70.3
BolC3t16174H Brassica oleracea HOM05D002977 ORTHO05D003225 6.3e-148 528.1 431 70.3
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 2.4e-147 526.2 429 70.4
BcaB01g02155 Brassica carinata HOM05D002977 ORTHO05D003225 4.1e-147 525.4 433 70.4
Aa31LG5G240 Aethionema arabicum HOM05D002977 ORTHO05D003225 1.9e-136 490.0 477 62.3
THA.LOC104801463 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 1.3e-121 440.7 453 58.9
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 1.3e-52 211.5 446 40.6
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 1.3e-52 211.5 461 39.0
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 8.5e-52 208.8 460 37.4
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.1e-51 208.4 475 37.7
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 6.7e-49 199.1 449 38.5
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 1.3e-47 194.9 481 37.6
TWI59G0633 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 2.8e-47 193.7 459 38.8
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 1.8e-46 191.0 404 40.1
Haze_15232 Corylus avellana HOM05D002977 ORTHO05D003225 1.6e-45 188.0 443 37.2
Potri.014G077400 Populus trichocarpa HOM05D002977 ORTHO05D003225 5.9e-45 186.0 478 35.1
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 4.2e-43 179.9 509 34.8
Sabra14G0054900 Salix brachista HOM05D002977 ORTHO05D003225 9.4e-43 178.7 467 36.4
Cfa004177 Carpinus fangiana HOM05D002977 ORTHO05D003225 2.7e-42 177.2 440 38.6
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 1.5e-40 171.4 458 36.2
MD07G1125600 Malus domestica HOM05D002977 ORTHO05D003225 4.4e-40 169.9 486 35.4
MD01G1047600 Malus domestica HOM05D002977 ORTHO05D003225 2.8e-39 167.2 485 34.8
FAN06G3334 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.7e-37 160.6 454 35.2
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 4.5e-37 159.8 456 34.0
VMungo0331G1467 Vigna mungo HOM05D002977 ORTHO05D003225 1.0e-36 158.7 441 32.9
Glyma.07G079500 Glycine max HOM05D002977 ORTHO05D003225 1.3e-36 158.3 441 31.5
Glyma.03G017800 Glycine max HOM05D002977 ORTHO05D003225 2.2e-36 157.5 448 32.1
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 5.0e-36 156.4 457 34.4
Phvul.010G089700 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 2.5e-35 154.1 359 35.4
FvH4_7g12980 Fragaria vesca HOM05D002977 ORTHO05D003225 3.2e-35 153.7 457 34.6
Medtr8g032770 Medicago truncatula HOM05D002977 ORTHO05D003225 2.1e-34 151.0 453 33.8
Ca_23758_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 2.7e-34 150.6 447 34.2
FAN06G4128 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.7e-34 150.6 466 34.1
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 6.8e-33 146.0 499 33.5
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 1.2e-32 145.2 486 32.9
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 4.9e-31 139.8 452 32.7
Psat4g151680 Pisum sativum HOM05D002977 ORTHO05D003225 5.4e-30 136.3 458 30.6
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 7.0e-30 136.0 480 30.2
Gohir.D08G150500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 9.1e-30 135.6 457 30.0
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 1.2e-29 135.2 455 31.9
CANSAT56G0238 Cannabis sativa HOM05D002977 ORTHO05D003225 1.6e-29 134.8 470 31.3
Gohir.A08G129200 Gossypium hirsutum HOM05D002977 ORTHO05D003225 5.9e-29 132.9 457 30.6
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 1.3e-28 131.7 445 31.2
Gorai.004G156200 Gossypium raimondii HOM05D002977 ORTHO05D003225 2.3e-28 131.0 457 29.5
FAN01G0110 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.9e-28 130.6 473 31.9
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 9.5e-27 125.6 467 33.6
Lalb_Chr10g0097561 Lupinus albus HOM05D002977 ORTHO05D003225 2.1e-26 124.4 453 31.6
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 3.6e-26 123.6 484 32.0
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 6.1e-26 122.9 454 30.4
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 3.0e-25 120.6 491 31.8
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 4.0e-25 120.2 452 31.2
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 4.0e-25 120.2 451 30.4
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 2.0e-24 117.9 438 32.2
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 3.4e-24 117.1 456 30.0
Lj3g0026127 Lotus japonicus HOM05D002977 ORTHO05D003225 4.4e-24 116.7 448 32.1
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 1.7e-23 114.8 453 29.8
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 2.2e-23 114.4 453 30.7
arahy.Tifrunner.gnm1.ann1.XNH79U Arachis hypogaea HOM05D002977 ORTHO05D003225 8.3e-23 112.5 463 30.7
TWI14G0163 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 8.3e-23 112.5 455 30.8
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 1.1e-22 112.1 476 28.6
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 4.1e-22 110.2 456 29.2
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 5.4e-22 109.8 488 29.5
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 7.0e-22 109.4 484 31.4
arahy.Tifrunner.gnm1.ann1.YQQF81 Arachis hypogaea HOM05D002977 ORTHO05D003225 7.0e-22 109.4 465 30.5
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 9.2e-22 109.0 487 27.3
CAN.G170.54 Capsicum annuum HOM05D002977 ORTHO05D003225 2.0e-21 107.8 476 30.5
Manes.05G040400 Manihot esculenta HOM05D002977 ORTHO05D003225 2.7e-21 107.5 469 30.9
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 2.7e-21 107.5 482 28.2
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 2.7e-21 107.5 418 32.1
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 4.6e-21 106.7 488 29.9
Duzib133G0091 Durio zibethinus HOM05D002977 ORTHO05D003225 2.9e-20 104.0 243 35.4
Manes.01G262800 Manihot esculenta HOM05D002977 ORTHO05D003225 3.9e-20 103.6 287 39.4
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 3.3e-19 100.5 471 27.0
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 3.3e-19 100.5 478 28.7
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 4.3e-19 100.1 486 28.6
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 7.3e-19 99.4 488 27.9
Eucgr.E00281 Eucalyptus grandis HOM05D002977 ORTHO05D003225 1.2e-18 98.6 468 30.8
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 2.8e-18 97.4 459 27.7
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 2.8e-18 97.4 483 25.1
A02p24230 Brassica napus HOM05D002977 ORTHO05D040183 6.2e-18 96.3 110 61.8
Lsat_1_v5_gn_7_8261 Lactuca sativa HOM05D002977 ORTHO05D003225 1.8e-17 94.7 447 29.8
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.3e-17 94.4 486 26.3
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 2.3e-17 94.4 455 28.8
PGR042G2435 Punica granatum HOM05D002977 ORTHO05D003225 5.2e-17 93.2 463 28.5
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 8.9e-17 92.4 483 25.5
HanXRQChr06g0168991 Helianthus annuus HOM05D002977 ORTHO05D003225 1.5e-16 91.7 359 29.0
Oeu059227.1 Olea europaea HOM05D002977 ORTHO05D003225 2.0e-16 91.3 343 35.9
Oeu059228.1 Olea europaea HOM05D002977 ORTHO05D003225 4.4e-16 90.1 344 35.8
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 7.5e-16 89.4 469 28.8
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 9.8e-16 89.0 490 26.5
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 1.7e-15 88.2 463 26.6
Nitab4.5_0000134g0230 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.9e-15 87.4 455 29.5
Nitab4.5_0004550g0040 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.9e-15 87.4 467 30.4
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 3.7e-15 87.0 476 27.3
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.9e-14 84.7 389 26.2
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 2.4e-14 84.3 487 26.7
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 3.2e-14 84.0 489 25.8
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 3.2e-14 84.0 482 26.6
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 4.1e-14 83.6 489 27.6
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 5.4e-14 83.2 478 25.9
CiPaw.02G024700 Carya illinoinensis HOM05D002977 ORTHO05D003225 5.4e-14 83.2 240 31.7
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 7.0e-14 82.8 481 27.7
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 7.0e-14 82.8 470 27.2
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 1.2e-13 82.0 490 27.6
DCAR_008585 Daucus carota HOM05D002977 ORTHO05D003225 1.2e-13 82.0 429 27.7
Actinidia14518 Actinidia chinensis HOM05D000078 ORTHO05D003225 1.6e-13 81.6 329 31.0
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 2.7e-13 80.9 489 27.0
MSTRG.20788 Avicennia marina HOM05D002977 ORTHO05D003225 3.5e-13 80.5 403 31.3
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 3.5e-13 80.5 448 27.0
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 7.8e-13 79.3 470 24.9
Ah.16g108930 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.0e-12 79.0 291 33.0
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 1.3e-12 78.6 309 30.1
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.7e-12 78.2 303 28.4
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 1.7e-12 78.2 501 25.7
Nitab4.5_0003356g0060 Nicotiana tabacum HOM05D002977 ORTHO05D003225 5.0e-12 76.6 448 27.0
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 8.6e-12 75.9 522 28.2
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 8.6e-12 75.9 480 27.7
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 8.6e-12 75.9 487 25.1
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 1.5e-11 75.1 493 27.2
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.5e-11 75.1 309 29.4
Nitab4.5_0010430g0070 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.9e-11 74.7 206 40.8
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 3.3e-11 73.9 490 26.9
EL10Ac1g00967 Beta vulgaris HOM05D002977 ORTHO05D003225 1.2e-10 72.0 304 29.9
Cc02_g37200 Coffea canephora HOM05D002977 ORTHO05D003225 1.2e-10 72.0 451 25.1
DCAR_006904 Daucus carota HOM05D002977 ORTHO05D003225 2.8e-10 70.9 239 36.4
Hund16963 Selenicereus undatus HOM05D002977 ORTHO05D003225 2.8e-10 70.9 380 28.4
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 4.7e-10 70.1 485 25.8
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 4.7e-10 70.1 505 25.1
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 4.7e-10 70.1 464 27.2
ClCG05G001920 Citrullus lanatus HOM05D002977 ORTHO05D003225 8.1e-10 69.3 186 40.9
MELO3C006152.2 Cucumis melo HOM05D002977 ORTHO05D003225 8.1e-10 69.3 204 38.7
ECA236G0338 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.8e-09 68.2 448 27.0
Lj2A196T48 Lonicera japonica HOM05D002977 ORTHO05D003225 1.8e-09 68.2 311 32.2
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.8e-09 68.2 492 24.4
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 4.0e-09 67.0 482 24.3
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 8.9e-09 65.9 396 29.3
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.2e-08 65.5 475 24.2
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.2e-08 65.5 480 27.3
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 1.5e-08 65.1 453 24.9
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 1.5e-08 65.1 453 24.9
CsaV3_3G009320 Cucumis sativus L. HOM05D002977 ORTHO05D003225 1.5e-08 65.1 194 38.7
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 2.6e-08 64.3 406 24.6
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 2.6e-08 64.3 407 27.0
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.6e-08 64.3 497 26.8
Oeu024421.1 Olea europaea HOM05D002977 ORTHO05D003225 2.6e-08 64.3 342 34.5
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 9.8e-08 62.4 489 26.8
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 2.9e-07 60.8 475 25.7
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 3.7e-07 60.5 485 25.2
Oeu024422.1 Olea europaea HOM05D002977 ORTHO05D003225 3.7e-07 60.5 342 33.9
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 4.9e-07 60.1 423 26.5
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 4.9e-07 60.1 262 27.5
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 4.9e-07 60.1 262 27.5
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 8.3e-07 59.3 254 28.7
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 8.3e-07 59.3 504 26.2
Sed0021237 Sechium edule HOM05D002977 ORTHO05D003225 8.3e-07 59.3 187 36.9
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 1.1e-06 58.9 219 28.8
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 2.4e-06 57.8 211 32.7
CARHR254530 Cardamine hirsuta HOM05D002977 ORTHO05D003225 3.2e-06 57.4 485 24.5
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 3.2e-06 57.4 505 27.5
BolC2t09827H Brassica oleracea HOM05D002977 ORTHO05D040183 5.4e-06 56.6 52 67.3
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 5.4e-06 56.6 407 25.1
Migut.B01683 Erythranthe guttata HOM05D002977 ORTHO05D003225 9.2e-06 55.8 361 29.6


User provided reference genes

Program Settings