Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 1.5e-131 473.0 260 100.0
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 2.5e-123 445.7 262 95.0
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 4.3e-115 418.3 260 87.3
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 8.9e-113 410.6 260 85.8
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 1.9e-110 402.9 264 86.0
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 9.6e-107 390.6 260 83.1
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 1.1e-105 387.1 254 83.1
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 8.9e-105 384.0 254 83.1
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 1.1e-102 377.1 260 78.8
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 1.4e-102 376.7 254 81.5
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 2.4e-102 375.9 254 81.5
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 1.3e-98 363.6 254 78.7
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 2.8e-98 362.5 260 77.7
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 1.1e-97 360.5 254 76.8
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 3.1e-97 359.0 254 78.3
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.4e-89 332.8 261 67.4
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 1.6e-85 320.1 260 70.0
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 3.5e-85 318.9 260 69.6
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 4.6e-85 318.5 254 72.8
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 1.0e-84 317.4 257 70.0
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 5.1e-84 315.1 260 64.6
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 6.7e-84 314.7 262 71.0
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 1.5e-83 313.5 257 69.3
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 7.4e-83 311.2 261 66.7
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 1.3e-82 310.5 254 68.9
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 2.4e-81 306.2 260 69.2
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 2.2e-79 299.7 253 64.4
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 3.2e-78 295.8 261 66.7
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 4.2e-78 295.4 253 68.0
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 7.1e-78 294.7 254 67.3
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.5e-67 259.6 248 61.3
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 7.0e-41 171.8 249 46.6
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 7.0e-41 171.8 249 46.6
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 3.5e-40 169.5 266 45.1
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 7.7e-40 168.3 263 45.2
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 7.7e-40 168.3 263 45.2
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 7.7e-40 168.3 254 41.7
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 1.0e-39 167.9 255 47.1
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 1.7e-39 167.2 263 45.2
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 1.7e-39 167.2 263 45.2
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.2e-39 166.8 258 46.5
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 2.2e-39 166.8 254 42.1
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.9e-39 166.4 258 46.1
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 8.5e-39 164.9 256 41.4
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 8.5e-39 164.9 257 47.9
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 3.2e-38 162.9 258 45.7
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 2.7e-37 159.8 252 45.2
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 2.7e-37 159.8 252 45.2
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 6.1e-37 158.7 256 40.6
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 4.0e-36 156.0 258 46.5
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 6.8e-36 155.2 257 38.5
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 2.6e-35 153.3 249 45.4
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 2.6e-35 153.3 249 45.4
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 1.7e-34 150.6 259 37.5
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.7e-34 150.6 248 44.8
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 4.8e-34 149.1 245 38.0
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 4.8e-34 149.1 253 44.7
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 4.8e-34 149.1 260 39.2
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 1.6e-32 144.1 252 43.3
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 4.5e-32 142.5 176 44.9
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 2.9e-31 139.8 263 45.2
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 2.9e-31 139.8 253 40.3
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.8e-31 139.4 256 37.9
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.8e-31 139.4 248 36.7
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 5.0e-31 139.0 252 37.7
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 5.0e-31 139.0 255 34.5
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 6.5e-31 138.7 254 40.2
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.9e-30 137.1 248 36.3
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 3.3e-30 136.3 262 37.8
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 4.2e-30 136.0 262 37.8
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 7.2e-30 135.2 255 45.1
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 9.5e-30 134.8 258 40.7
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 3.6e-29 132.9 255 43.5
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 8.0e-29 131.7 248 44.8
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 8.0e-29 131.7 252 39.7
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.4e-28 131.0 262 37.0
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 2.3e-28 130.2 262 39.3
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 3.0e-28 129.8 249 37.8
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 6.8e-28 128.6 260 33.8
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 8.9e-28 128.3 262 37.0
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 2.6e-27 126.7 260 37.7
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 2.6e-27 126.7 252 36.9
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 3.4e-27 126.3 257 37.0
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 4.4e-27 125.9 259 37.8
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 5.7e-27 125.6 147 49.7
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 2.2e-26 123.6 257 37.4
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 3.1e-25 119.8 257 36.2
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 5.4e-25 119.0 254 39.0
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 7.0e-25 118.6 258 38.8
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 3.5e-24 116.3 262 37.0
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 4.5e-24 115.9 250 38.8
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 5.9e-24 115.5 251 38.2
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 2.9e-23 113.2 257 35.0
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 2.9e-23 113.2 258 37.2
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 3.8e-23 112.8 252 38.5
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 4.3e-22 109.4 243 31.7
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 7.3e-22 108.6 247 38.5
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 9.5e-22 108.2 247 34.8
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 2.8e-21 106.7 261 38.3
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 3.6e-21 106.3 252 37.3
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 3.6e-21 106.3 258 38.4
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 6.1e-21 105.5 260 33.1
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 8.9e-20 101.7 246 38.2
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 3.4e-19 99.8 259 34.0
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 3.4e-19 99.8 251 36.3
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 4.4e-19 99.4 145 39.3
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 9.8e-19 98.2 174 37.9
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 2.9e-18 96.7 251 37.5
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.7e-18 96.3 151 37.7
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 6.4e-18 95.5 251 35.1
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 1.4e-17 94.4 251 34.7
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 2.4e-17 93.6 248 35.5
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 4.1e-17 92.8 251 35.1
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 4.1e-17 92.8 250 31.2
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 9.2e-17 91.7 255 35.7
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 2.0e-16 90.5 250 31.2
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 2.0e-16 90.5 251 33.1
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 2.7e-16 90.1 250 31.6
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 2.7e-16 90.1 247 34.4
Sc23g0005630 Simmondsia chinensis HOM05D002137 ORTHO05D002144 1.0e-15 88.2 204 33.3
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 2.3e-15 87.0 249 32.5
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 3.0e-15 86.7 254 32.7
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 3.0e-15 86.7 174 32.2
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 3.0e-15 86.7 252 32.9
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 3.0e-15 86.7 247 32.8
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 6.6e-15 85.5 249 28.5
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 8.6e-15 85.1 260 33.1
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.1e-14 84.7 249 32.1
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 2.5e-14 83.6 251 31.5
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 3.3e-14 83.2 209 36.8
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 4.3e-14 82.8 100 46.0
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 4.3e-14 82.8 251 32.7
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 1.2e-13 81.3 251 33.9
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 1.6e-13 80.9 113 44.2
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 2.8e-13 80.1 177 29.9
CAN.G449.55 Capsicum annuum HOM05D002137 ORTHO05D002144 1.1e-12 78.2 186 28.0
Manes.11G026200 Manihot esculenta HOM05D002137 ORTHO05D002144 4.0e-12 76.3 186 29.6
Thhalv10008522m.g Eutrema salsugineum HOM05D002137 ORTHO05D002144 8.9e-12 75.1 156 29.5
THA.LOC104812217 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 8.9e-12 75.1 180 27.2
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 1.2e-11 74.7 246 32.5
Aa31LG7G2430 Aethionema arabicum HOM05D002137 ORTHO05D002144 4.4e-11 72.8 179 27.9
Manes.04G139900 Manihot esculenta HOM05D002137 ORTHO05D002144 4.4e-11 72.8 186 28.0
CSS0050252 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 5.8e-11 72.4 185 28.1
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 7.5e-11 72.0 171 28.1
Migut.A00132 Erythranthe guttata HOM05D002137 ORTHO05D002144 1.3e-10 71.2 247 29.1
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.2e-10 70.5 226 27.4
MELO3C013058.2 Cucumis melo HOM05D002137 ORTHO05D002144 2.9e-10 70.1 186 29.6
CsaV3_3G043870 Cucumis sativus L. HOM05D002137 ORTHO05D002144 2.9e-10 70.1 186 29.0
Sp1g15730 Schrenkiella parvula HOM05D002137 ORTHO05D002144 3.7e-10 69.7 153 28.8
TAR626G1375 Trochodendron aralioides HOM05D002137 ORTHO05D002144 6.4e-10 68.9 186 31.2
Nitab4.5_0001295g0090 Nicotiana tabacum HOM05D002137 ORTHO05D002144 1.1e-09 68.2 174 28.7
TAR383G0516 Trochodendron aralioides HOM05D002137 ORTHO05D002144 1.1e-09 68.2 229 25.8
CARHR018230 Cardamine hirsuta HOM05D002137 ORTHO05D002144 1.4e-09 67.8 158 29.1
SGA_v2.0_scaffold20G09222 Striga asiatica HOM05D002137 ORTHO05D002144 7.0e-09 65.5 249 28.5
GSVIVG01016858001 Vitis vinifera HOM05D002137 ORTHO05D002144 7.0e-09 65.5 224 26.3
BcaC01g05087 Brassica carinata HOM05D001597 ORTHO05D001512 1.6e-08 64.3 172 31.4
Gohir.D05G137400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 4.6e-08 62.8 192 26.6
Potri.003G039400 Populus trichocarpa HOM05D002137 ORTHO05D002144 4.6e-08 62.8 186 26.9
Haze_15956 Corylus avellana HOM05D002137 ORTHO05D002144 6.0e-08 62.4 186 26.9
Psat3g003480 Pisum sativum HOM05D005178 ORTHO05D006123 6.0e-08 62.4 132 32.6
Gohir.A05G135400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 1.0e-07 61.6 192 26.0
Potri.001G200700 Populus trichocarpa HOM05D002137 ORTHO05D002144 1.7e-07 60.8 174 27.0
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 2.3e-07 60.5 165 29.7
Manes.02G211300 Manihot esculenta HOM05D008517 ORTHO05D010482 2.3e-07 60.5 163 29.4
Nn6g35491 Nelumbo nucifera HOM05D002137 ORTHO05D002144 2.3e-07 60.5 159 27.0
Nn8g38851 Nelumbo nucifera HOM05D002137 ORTHO05D002144 3.0e-07 60.1 160 30.0
Sabra03G0024200 Salix brachista HOM05D002137 ORTHO05D002144 3.0e-07 60.1 186 26.3
Cc04_g01920 Coffea canephora HOM05D002137 ORTHO05D002144 5.0e-07 59.3 163 27.6
Actinidia21764 Actinidia chinensis HOM05D002137 ORTHO05D002144 1.1e-06 58.2 186 28.5
DCAR_016157 Daucus carota HOM05D002137 ORTHO05D002144 1.5e-06 57.8 154 27.9


User provided reference genes

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