Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 1.8e-282 975.3 503 100.0
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 7.5e-249 863.6 508 89.8
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 1.2e-235 819.7 508 84.6
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 1.8e-226 789.3 508 82.5
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 7.8e-222 773.9 517 80.5
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 1.3e-221 773.1 515 80.4
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 5.6e-212 741.1 514 75.9
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 8.1e-211 737.3 515 75.9
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.8e-210 736.1 514 75.7
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 1.2e-209 733.4 511 75.7
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 1.3e-208 729.9 513 76.2
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 1.6e-206 723.0 511 75.5
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 9.5e-204 713.8 515 74.2
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 2.6e-201 705.7 515 74.6
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 2.6e-201 705.7 515 74.6
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 2.6e-201 705.7 515 74.6
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 6.4e-200 701.0 518 73.0
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 2.3e-197 692.6 514 73.0
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 2.1e-182 642.9 506 70.2
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 5.7e-156 555.1 515 61.0
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 1.1e-103 381.3 572 43.5
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.7e-99 367.5 572 41.8
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 1.7e-96 357.5 585 41.0
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 1.2e-94 351.3 590 40.5
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 6.2e-94 349.0 593 41.5
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 1.4e-93 347.8 571 41.0
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.3e-93 347.1 568 42.4
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 6.8e-93 345.5 593 41.7
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.2e-92 344.7 553 41.4
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.0e-92 344.0 519 42.6
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 2.6e-92 343.6 580 41.4
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 4.4e-92 342.8 584 42.0
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 2.2e-91 340.5 592 41.2
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.4e-90 337.8 611 38.6
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 2.4e-90 337.0 592 41.0
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 2.4e-90 337.0 576 41.0
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 7.1e-90 335.5 571 40.5
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 9.2e-90 335.1 573 39.8
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 1.2e-89 334.7 587 39.5
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 1.6e-89 334.3 553 40.9
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 3.5e-89 333.2 605 38.7
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 6.0e-89 332.4 584 41.3
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 7.8e-89 332.0 557 39.9
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.7e-88 330.9 558 41.6
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 3.0e-88 330.1 545 43.1
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 1.1e-87 328.2 581 41.3
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 1.9e-87 327.4 594 38.2
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 4.3e-87 326.2 638 38.2
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 7.3e-87 325.5 587 39.7
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 9.5e-87 325.1 559 40.1
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 9.5e-87 325.1 541 39.4
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 1.2e-86 324.7 572 40.7
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.6e-86 324.3 569 39.2
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 2.1e-86 323.9 605 38.0
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 2.4e-85 320.5 573 40.1
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 6.8e-85 318.9 603 38.3
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.6e-84 317.0 583 40.3
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 3.4e-84 316.6 586 40.1
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 7.6e-84 315.5 562 39.9
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.7e-83 314.3 595 38.7
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 1.1e-82 311.6 569 39.7
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 4.1e-82 309.7 563 40.5
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 5.4e-82 309.3 592 38.2
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 9.2e-82 308.5 585 38.1
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.3e-80 304.7 571 39.1
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 5.1e-80 302.8 524 38.0
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 4.3e-79 299.7 546 38.3
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.2e-78 298.1 695 35.3
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.8e-77 294.3 581 37.9
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 2.4e-77 293.9 597 36.5
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.1e-77 293.5 573 37.7
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 6.9e-77 292.4 579 37.8
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.5e-76 291.2 503 39.8
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 4.9e-75 286.2 562 38.4
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 2.4e-74 283.9 289 53.6
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 4.6e-73 279.6 604 36.4
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 1.3e-72 278.1 619 35.4
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 1.7e-72 277.7 501 38.9
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.6e-70 271.2 558 36.4
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 1.6e-70 271.2 305 49.5
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.8e-70 270.4 568 35.7
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 4.8e-70 269.6 578 36.7
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 6.2e-70 269.2 600 35.3
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.2e-70 269.2 600 35.3
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.1e-70 268.9 600 35.3
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 2.4e-69 267.3 531 37.5
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 5.3e-69 266.2 302 49.7
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.0e-69 265.4 597 34.8
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.2e-68 265.0 302 49.0
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.5e-68 264.6 383 43.3
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 3.4e-68 263.5 529 36.7
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 5.8e-68 262.7 611 34.5
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 1.4e-66 258.1 576 33.3
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.2e-66 256.9 521 35.9
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.4e-66 256.1 364 44.2
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 7.9e-65 252.3 478 38.1
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 7.9e-65 252.3 499 36.9
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 2.5e-63 247.3 643 32.8
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 4.3e-63 246.5 292 46.9
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 4.0e-61 240.0 581 34.4
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 5.3e-61 239.6 425 39.8
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.6e-57 228.0 514 35.0
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 5.1e-56 223.0 420 36.2
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 6.7e-56 222.6 478 35.8
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 6.7e-56 222.6 220 55.9
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 7.4e-55 219.2 596 32.9
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.6e-54 218.0 597 32.2
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 8.2e-54 215.7 384 37.8
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.4e-53 214.2 468 37.0
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 9.0e-53 212.2 440 33.9
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 2.6e-52 210.7 428 36.9
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 7.6e-52 209.1 483 35.0
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 6.5e-51 206.1 370 40.8
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 4.3e-47 193.4 581 32.4
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 4.3e-47 193.4 273 41.4
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 2.2e-46 191.0 378 35.7
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 1.5e-44 184.9 263 43.0
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.5e-44 183.3 263 42.6
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.7e-44 182.6 263 42.6
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.0e-43 182.2 264 41.3
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 2.9e-43 180.6 284 40.8
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 6.5e-43 179.5 148 68.2
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.6e-41 174.9 445 32.8
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.6e-41 173.7 259 41.3
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.9e-34 151.4 484 30.4
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 9.4e-34 149.1 429 33.1
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.8e-32 144.8 274 37.2
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.2e-30 136.0 408 31.6
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 5.3e-29 133.3 116 56.0
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 2.0e-28 131.3 104 61.5
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 5.9e-28 129.8 285 29.1
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.2e-26 122.9 416 30.5
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.2e-25 122.1 269 34.6
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 1.4e-24 118.6 157 41.4
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 3.9e-24 117.1 130 45.4
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 5.2e-24 116.7 327 33.3
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 7.7e-20 102.8 119 42.0
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 1.5e-18 98.6 73 72.6
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 5.5e-18 96.7 73 71.2
AT4G01245 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 9.4e-18 95.9 67 80.6
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 9.4e-18 95.9 73 71.2
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 2.1e-17 94.7 158 34.8
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 6.7e-16 89.7 271 26.9
A03p07720 Brassica napus HOM05D004224 ORTHO05D016135 2.8e-14 84.3 62 71.0
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 3.7e-14 84.0 251 30.7
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.8e-13 81.6 137 39.4
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.8e-13 81.6 322 30.1
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 4.1e-13 80.5 100 48.0
C02p16100 Brassica napus HOM05D004224 ORTHO05D016135 5.9e-12 76.6 53 79.2
BolC7t44656H Brassica oleracea HOM05D004687 ORTHO05D016135 2.2e-11 74.7 52 78.8
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 9.4e-10 69.3 96 42.7
Aa31sc194G50 Aethionema arabicum HOM05D004687 ORTHO05D006002 2.7e-09 67.8 109 40.4
C03p85080 Brassica napus HOM05D004224 ORTHO05D016135 4.0e-08 63.9 45 75.6
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.2e-07 62.4 92 41.3
C04p38640 Brassica napus HOM05D001371 ORTHO05D014523 5.7e-07 60.1 44 70.5
C06p44760 Brassica napus HOM05D004224 ORTHO05D016135 1.7e-06 58.5 48 72.9


User provided reference genes

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