Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 7.6e-144 513.8 265 100.0
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.6e-138 496.1 261 97.7
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 9.0e-137 490.3 265 95.8
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 1.1e-134 483.4 266 94.0
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 4.3e-131 471.5 266 91.7
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 3.7e-130 468.4 269 90.3
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 2.6e-128 462.2 265 91.3
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 4.5e-128 461.5 265 90.9
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 4.5e-128 461.5 265 90.9
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 4.5e-128 461.5 265 90.9
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 7.7e-128 460.7 265 90.9
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 5.0e-127 458.0 265 90.2
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 7.0e-121 437.6 250 91.6
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 2.0e-120 436.0 250 91.2
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.0e-116 423.7 245 88.6
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.8e-116 422.9 249 88.8
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.8e-116 422.9 249 88.8
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.4e-113 413.3 271 78.2
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 6.3e-106 387.9 270 73.7
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 9.1e-105 384.0 269 72.9
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.7e-103 379.8 269 75.1
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 2.9e-103 379.0 269 72.9
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 6.1e-101 371.3 267 70.0
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 8.0e-101 370.9 268 70.5
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 1.0e-100 370.5 270 71.9
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.4e-100 370.2 267 69.3
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 2.3e-100 369.4 264 68.9
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 5.2e-100 368.2 265 71.7
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 4.4e-99 365.2 272 70.2
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 4.4e-99 365.2 267 71.5
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 4.4e-99 365.2 265 72.1
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 5.7e-99 364.8 267 72.3
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 9.8e-99 364.0 270 70.4
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 9.8e-99 364.0 265 72.8
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.3e-98 363.6 268 69.8
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 4.8e-98 361.7 269 70.6
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 6.3e-98 361.3 265 70.6
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 8.3e-98 360.9 265 70.2
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 8.3e-98 360.9 266 69.9
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 4.1e-97 358.6 268 69.4
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 7.0e-97 357.8 266 68.8
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 7.0e-97 357.8 269 67.7
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 9.1e-97 357.5 267 68.5
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.6e-96 356.7 263 70.7
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.6e-96 356.7 263 70.7
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.6e-96 356.7 263 70.7
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.6e-96 356.7 264 70.8
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.6e-96 356.7 264 70.8
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 1.6e-96 356.7 264 70.8
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 2.0e-96 356.3 266 70.7
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.0e-96 356.3 267 68.2
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 2.7e-96 355.9 264 69.7
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 3.5e-96 355.5 197 92.9
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 3.5e-96 355.5 197 92.9
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 4.5e-96 355.1 263 70.3
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.5e-96 355.1 263 70.3
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.5e-96 355.1 263 70.3
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.5e-96 355.1 267 68.5
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 7.7e-96 354.4 266 69.9
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 7.7e-96 354.4 263 70.0
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 1.7e-95 353.2 266 70.3
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 2.9e-95 352.4 268 68.7
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 2.9e-95 352.4 268 68.3
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 3.8e-95 352.1 267 68.9
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.8e-95 352.1 267 68.2
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 6.6e-95 351.3 271 67.2
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 6.6e-95 351.3 267 68.9
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.5e-94 350.1 268 67.5
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.9e-94 349.7 274 67.5
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 3.3e-94 349.0 267 67.8
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 4.2e-94 348.6 274 66.8
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 5.5e-94 348.2 267 67.4
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.2e-93 347.1 274 66.4
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 1.6e-93 346.7 261 69.0
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 1.6e-93 346.7 266 67.7
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 1.0e-92 344.0 267 67.4
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 1.0e-92 344.0 268 66.8
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 3.0e-92 342.4 274 66.1
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 6.8e-92 341.3 265 69.1
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 6.8e-92 341.3 261 66.7
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 1.2e-91 340.5 267 65.9
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.0e-91 339.7 267 65.2
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 2.0e-91 339.7 261 66.7
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 2.6e-91 339.3 271 68.6
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 5.7e-91 338.2 266 67.3
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.7e-90 336.7 261 66.3
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 1.7e-90 336.7 269 67.7
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 2.2e-90 336.3 267 65.2
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 3.7e-90 335.5 272 65.8
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 4.9e-90 335.1 271 63.5
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.8e-89 333.2 261 65.9
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 4.1e-89 332.0 262 66.4
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.3e-87 327.0 271 62.7
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 3.9e-87 325.5 272 62.5
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 3.3e-86 322.4 221 71.0
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 6.1e-85 318.2 250 63.2
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 2.0e-83 313.2 245 64.1
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 5.8e-83 311.6 305 56.4
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.9e-82 309.3 266 61.3
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 4.9e-82 308.5 234 66.7
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 2.4e-81 306.2 191 77.0
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 3.6e-77 292.4 244 59.4
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 5.2e-76 288.5 261 59.8
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 2.0e-75 286.6 221 61.5
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 9.8e-75 284.3 266 58.3
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 1.9e-73 280.0 184 73.4
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.3e-70 268.9 192 71.4
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 3.6e-69 265.8 247 54.7
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 4.7e-69 265.4 220 56.4
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 5.2e-68 261.9 236 54.7
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 2.9e-66 256.1 244 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.9e-65 253.4 194 60.8
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 3.2e-65 252.7 225 58.7
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 9.2e-65 251.1 180 63.3
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 1.7e-58 230.3 265 55.5
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 1.7e-58 230.3 265 55.5
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 4.9e-58 228.8 265 55.1
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 3.2e-57 226.1 177 68.9
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.5e-51 207.2 144 67.4
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 1.6e-48 197.2 132 75.8
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 1.5e-43 180.6 153 52.9
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.9e-38 163.7 116 72.4
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 3.3e-38 162.9 154 47.4
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 9.6e-38 161.4 157 55.4
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 4.8e-37 159.1 115 67.8
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 2.0e-27 127.1 98 68.4
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 5.8e-27 125.6 179 36.3
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.0e-23 114.8 76 73.7
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.7e-18 97.4 90 54.4
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 2.2e-18 97.1 70 65.7
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 6.7e-15 85.5 58 67.2
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 1.1e-14 84.7 163 27.6
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 1.2e-11 74.7 60 61.7
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.0e-11 73.9 85 50.6
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 4.2e-09 66.2 39 76.9
CDE10G0560 Ceratophyllum demersum HOM05D000487 ORTHO05D001505 4.4e-06 56.2 149 24.8
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 4.4e-06 56.2 55 56.4
Cfa027004 Carpinus fangiana HOM05D001556 ORTHO05D001505 5.7e-06 55.8 124 25.8
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 5.7e-06 55.8 113 33.6
DCAR_009775 Daucus carota HOM05D001556 ORTHO05D001505 7.4e-06 55.5 159 26.4
Cre01.g027000 Chlamydomonas reinhardtii HOM05D001556 ORTHO05D001505 9.7e-06 55.1 129 27.1
FAN21G1492 Fragaria x ananassa HOM05D001556 ORTHO05D001505 9.7e-06 55.1 142 25.4
RcHm_v2.0_Chr5g0011401 Rosa chinensis HOM05D001556 ORTHO05D001505 9.7e-06 55.1 138 26.1


User provided reference genes

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