Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 2672.9 1308 100.0
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 2464.1 1312 92.2
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 2370.9 1314 88.0
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 2297.3 1315 86.1
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 2208.7 1311 82.9
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 2204.1 1312 82.8
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 2200.6 1317 82.8
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 2194.9 1316 82.9
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 2191.4 1311 82.9
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 2189.8 1316 82.5
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 2171.7 1322 82.6
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 2079.3 1329 78.1
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1890.9 1323 70.1
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 0.0e+00 1801.6 1003 87.2
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1468.8 1385 54.7
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1457.2 1394 54.0
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1456.0 1395 53.9
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1453.7 1402 53.2
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1443.3 1387 54.4
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1440.2 1331 53.9
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1436.4 1399 52.9
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1431.0 1459 51.5
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1407.9 1381 52.9
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1398.6 1404 51.3
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1395.2 1482 49.5
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1392.5 1415 51.2
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1392.1 1454 50.8
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1389.0 1400 51.9
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1387.9 1381 52.4
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1386.3 1398 51.9
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1382.9 1379 51.6
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1382.1 1346 53.5
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1378.6 1367 51.4
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1372.1 1385 51.5
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1371.7 1385 51.4
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1366.7 1383 51.8
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1365.9 1392 50.9
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1364.7 1388 51.4
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1364.7 1388 50.6
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1360.5 1379 50.8
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1358.6 1386 50.6
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1358.6 1367 51.6
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1356.7 1412 50.4
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1353.2 1386 51.1
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1352.0 1383 51.0
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1348.2 1396 50.5
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1338.2 1374 49.8
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1335.5 1391 49.8
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1332.4 1389 50.5
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1330.5 1387 49.5
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1330.1 1421 48.6
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1322.8 1390 49.4
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1310.8 1369 48.6
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1309.3 1397 49.5
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1306.6 1380 50.0
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1302.7 1405 48.3
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1297.0 1403 48.6
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1291.6 1403 48.3
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1290.8 1345 50.4
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1289.2 1378 48.5
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1284.6 1402 48.4
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1282.7 1475 47.1
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1272.3 1152 56.1
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1270.4 1325 50.2
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1265.4 1401 47.7
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1265.0 1344 50.4
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1233.8 1316 49.5
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1231.9 1381 47.3
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1225.7 1384 46.8
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1225.3 1154 55.3
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1223.8 1151 53.9
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1221.5 1448 46.5
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1216.1 1307 48.7
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1210.7 1375 46.6
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1203.3 1399 47.2
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1196.4 1415 45.4
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1189.5 1367 47.5
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1161.7 1365 46.8
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1120.1 1383 44.2
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1090.5 1393 44.7
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1083.9 1080 51.5
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 6.8e-310 1067.8 1344 43.2
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 8.0e-303 1044.3 976 53.2
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 7.5e-301 1037.7 1052 50.5
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 1.7e-300 1036.6 1052 50.4
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 3.9e-297 1025.4 947 53.1
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 6.4e-276 954.9 945 53.0
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 7.6e-245 851.7 1370 36.9
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 4.2e-235 819.3 1480 37.2
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 4.5e-229 799.3 880 49.9
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 5.5e-227 792.3 1487 33.8
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 1.9e-219 767.3 1479 34.6
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 4.1e-214 749.6 730 50.8
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 4.0e-201 706.4 811 46.6
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 4.4e-200 703.0 601 58.4
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 1.6e-186 657.9 1315 34.6
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 4.1e-182 643.3 752 46.9
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 2.2e-175 620.9 564 53.5
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 1.9e-171 607.8 595 50.4
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 7.3e-163 579.3 782 40.7
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 6.2e-162 576.2 765 42.2
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 8.6e-156 555.8 1280 31.3
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 2.8e-154 550.8 579 49.2
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 6.9e-145 519.6 878 37.2
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 7.6e-144 516.2 653 44.7
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 9.3e-126 456.1 579 44.4
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 4.2e-94 350.9 379 50.4
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 4.4e-91 340.9 206 79.6
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 1.8e-89 335.5 406 44.8
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 3.2e-86 324.7 317 53.6
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-85 322.4 360 47.5
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 6.3e-74 283.9 1518 23.9
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.3e-71 276.2 302 47.4
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 2.0e-67 262.3 255 54.9
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 1.3e-63 249.6 1281 24.4
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 4.3e-62 244.6 271 50.6
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 8.0e-61 240.4 332 41.6
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 2.5e-54 218.8 244 50.4
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 2.8e-53 215.3 203 48.3
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.4e-51 208.4 298 39.3
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 7.8e-48 197.2 255 41.2
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 1.3e-47 196.4 215 49.8
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 5.1e-47 194.5 186 51.6
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-44 186.4 535 28.4
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 1.6e-40 172.9 190 51.6
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 9.6e-38 163.7 175 46.9
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 1.1e-33 150.2 189 43.9
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 9.6e-30 137.1 102 62.7
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 2.2e-26 125.9 232 33.6
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 8.4e-26 124.0 80 66.2
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.4e-25 123.2 176 35.8
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.7e-24 119.0 150 44.7
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 1.0e-23 117.1 69 72.5
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 1.3e-23 116.7 68 77.9
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 3.9e-23 115.2 105 46.7
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.9e-22 112.8 150 45.3
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 4.5e-19 101.7 115 45.2
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 1.8e-15 89.7 146 34.9
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 1.8e-15 89.7 79 54.4
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 1.8e-15 89.7 85 47.1
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.5e-11 75.1 56 67.9
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.5e-11 75.1 56 67.9
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.3e-10 73.6 74 50.0
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 1.7e-10 73.2 48 68.8
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 2.2e-10 72.8 65 53.8
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 6.5e-10 71.2 56 66.1
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 8.4e-10 70.9 56 66.1
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 1.9e-09 69.7 43 72.1
FvH4_3g29280 Fragaria vesca HOM05D001335 ORTHO05D001184 3.2e-09 68.9 257 25.3
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 7.1e-09 67.8 54 68.5
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 9.3e-09 67.4 72 51.4
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 1.6e-08 66.6 48 64.6
FAN21G3625 Fragaria x ananassa HOM05D001335 ORTHO05D001184 6.0e-08 64.7 200 25.5
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 6.0e-08 64.7 126 29.4
CBR_g29535 Chara braunii HOM05D004386 ORTHO05D005247 7.9e-08 64.3 171 29.2
THA.LOC104810966 Tarenaya hassleriana HOM05D006479 ORTHO05D008310 3.9e-07 62.0 214 25.2
Carub.0005s1541 Capsella rubella HOM05D002332 ORTHO05D002509 8.7e-07 60.8 196 28.1
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 8.7e-07 60.8 138 26.1
Pp3c26_9700 Physcomitrium patens HOM05D003769 ORTHO05D004521 1.1e-06 60.5 207 26.6
Eucgr.A02037 Eucalyptus grandis HOM05D001610 ORTHO05D001585 1.9e-06 59.7 136 27.9
AL5G28900 Arabidopsis lyrata HOM05D002332 ORTHO05D002509 2.5e-06 59.3 178 28.1
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-06 58.9 80 33.8
Cre04.g217991 Chlamydomonas reinhardtii HOM05D004810 ORTHO05D006272 3.3e-06 58.9 118 33.9
Sp5g12890 Schrenkiella parvula HOM05D002332 ORTHO05D002509 3.3e-06 58.9 178 27.5
CARHR158060 Cardamine hirsuta HOM05D002332 ORTHO05D002509 4.3e-06 58.5 157 29.9
SEGI_08021 Sequoiadendron giganteum HOM05D004386 ORTHO05D005247 5.7e-06 58.2 178 28.1
A09p03460 Brassica napus HOM05D004386 ORTHO05D005247 7.4e-06 57.8 179 26.3
BraA09t35984Z Brassica rapa HOM05D004386 ORTHO05D005247 7.4e-06 57.8 179 26.3
CBR_g18966 Chara braunii HOM05D014933 ORTHO05D016523 9.7e-06 57.4 131 26.7


User provided reference genes

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