Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G51140 Arabidopsis lyrata HOM05D006641 ORTHO05D007573 6.3e-109 397.5 211 100.0
AT4G02090 Arabidopsis thaliana HOM05D006641 ORTHO05D007573 2.3e-95 352.4 211 91.5
Sp6g01980 Schrenkiella parvula HOM05D006641 ORTHO05D007573 5.6e-89 331.3 211 83.4
Carub.0006s3513 Capsella rubella HOM05D006641 ORTHO05D007573 7.3e-89 330.9 217 84.8
BcaC04g24036 Brassica carinata HOM05D001136 ORTHO05D007573 7.3e-81 304.3 210 80.5
A09p01550 Brassica napus HOM05D006641 ORTHO05D007573 7.3e-81 304.3 207 80.7
BolC9t53098H Brassica oleracea HOM05D001136 ORTHO05D007573 7.3e-81 304.3 210 80.5
C09p01650 Brassica napus HOM05D001136 ORTHO05D007573 2.8e-80 302.4 210 80.0
BcaB01g02078 Brassica carinata HOM05D006641 ORTHO05D007573 8.1e-80 300.8 207 79.7
Thhalv10029320m.g Eutrema salsugineum HOM05D006641 ORTHO05D007573 1.4e-79 300.1 218 77.1
CARHR249590 Cardamine hirsuta HOM05D006641 ORTHO05D007573 2.6e-78 295.8 214 82.7
BraA09t35814Z Brassica rapa HOM05D001136 ORTHO05D007573 7.8e-75 284.3 214 77.6
Aa31LG5G1730 Aethionema arabicum HOM05D006641 ORTHO05D007573 4.0e-71 271.9 212 69.8
THA.LOC104801302 Tarenaya hassleriana HOM05D006641 ORTHO05D007573 1.1e-49 200.7 211 61.6
ClCG09G005170 Citrullus lanatus HOM05D006641 ORTHO05D007573 1.5e-25 120.6 199 42.2
Lj1g0024392 Lotus japonicus HOM05D006641 ORTHO05D007573 4.8e-24 115.5 204 40.2
Oeu008464.1 Olea europaea HOM05D006641 ORTHO05D007573 1.2e-22 110.9 204 41.7
Atru.chr5.1033 Acer truncatum HOM05D006641 ORTHO05D007573 1.5e-22 110.5 221 39.8
CsaV3_7G029900 Cucumis sativus L. HOM05D006641 ORTHO05D007573 2.0e-22 110.2 202 39.6
Manes.05G002600 Manihot esculenta HOM05D006641 ORTHO05D007573 2.6e-22 109.8 202 39.6
Peaxi162Scf00691g00003 Petunia axillaris HOM05D006641 ORTHO05D007573 4.5e-22 109.0 215 37.7
MELO3C015931.2 Cucumis melo HOM05D006641 ORTHO05D007573 7.7e-22 108.2 201 39.3
Nitab4.5_0001301g0080 Nicotiana tabacum HOM05D006641 ORTHO05D007573 7.7e-22 108.2 214 37.9
SalBow3G3599 Salvia bowleyana HOM05D006641 ORTHO05D007573 7.7e-22 108.2 227 37.0
Ca_10290_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 1.7e-21 107.1 221 35.3
Ca_30054_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 1.7e-21 107.1 221 35.3
Sed0015554 Sechium edule HOM05D006641 ORTHO05D007573 3.8e-21 105.9 215 39.1
Rhsim13G0005400 Rhododendron simsii HOM05D006641 ORTHO05D007573 6.5e-21 105.1 215 38.6
MD03G1296400 Malus domestica HOM05D006641 ORTHO05D007573 8.5e-21 104.8 224 37.9
Nitab4.5_0008979g0010 Nicotiana tabacum HOM05D006641 ORTHO05D007573 1.5e-20 104.0 219 36.5
DCAR_005769 Daucus carota HOM05D006641 ORTHO05D007573 1.9e-20 103.6 216 38.4
Glyma.19G215600 Glycine max HOM05D006641 ORTHO05D007573 2.5e-20 103.2 206 36.9
Ciclev10021856m.g Citrus clementina HOM05D006641 ORTHO05D007573 3.2e-20 102.8 218 39.0
Lalb_Chr15g0078301 Lupinus albus HOM05D006641 ORTHO05D007573 3.2e-20 102.8 200 40.5
Hma1.2p1_0486F.1_g163110 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 4.2e-20 102.4 207 36.7
Hma1.2p1_0486F.1_g163121 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 4.2e-20 102.4 207 36.7
Ah.11g049320 Amaranthus hybridus HOM05D000446 ORTHO05D000321 9.4e-20 101.3 191 38.7
CSS0030498 Camellia sinensis var. sinensis HOM05D006641 ORTHO05D007573 9.4e-20 101.3 205 41.0
CiPaw.07G116300 Carya illinoinensis HOM05D006641 ORTHO05D007573 9.4e-20 101.3 221 38.5
Duzib133G1491 Durio zibethinus HOM05D006641 ORTHO05D007573 9.4e-20 101.3 204 36.3
TWI36G0114 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 1.2e-19 100.9 193 38.3
arahy.Tifrunner.gnm1.ann1.DB9XMS Arachis hypogaea HOM05D006641 ORTHO05D007573 1.6e-19 100.5 216 36.6
FAN13G0974 Fragaria x ananassa HOM05D001136 ORTHO05D007573 1.6e-19 100.5 219 37.4
ATR0706G193 Amborella trichopoda HOM05D006641 ORTHO05D007573 2.7e-19 99.8 219 35.2
Migut.D00088 Erythranthe guttata HOM05D006641 ORTHO05D007573 2.7e-19 99.8 233 37.8
Gorai.001G143700 Gossypium raimondii HOM05D006641 ORTHO05D007573 2.7e-19 99.8 209 38.8
Lalb_Chr02g0146781 Lupinus albus HOM05D006641 ORTHO05D007573 2.7e-19 99.8 209 36.8
Thecc.01G311800 Theobroma cacao HOM05D006641 ORTHO05D007573 2.7e-19 99.8 221 36.7
Cfa005814 Carpinus fangiana HOM05D006641 ORTHO05D007573 3.6e-19 99.4 215 38.6
Gohir.A07G127900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.6e-19 99.4 209 39.2
Gohir.D07G132300 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.6e-19 99.4 209 38.8
Manes.01G226800 Manihot esculenta HOM05D006641 ORTHO05D007573 3.6e-19 99.4 202 39.1
Medtr1g087230 Medicago truncatula HOM05D006641 ORTHO05D007573 3.6e-19 99.4 208 36.5
PGSC0003DMG400009037 Solanum tuberosum HOM05D006641 ORTHO05D007573 3.6e-19 99.4 215 37.7
vmacro02409 Vaccinium macrocarpon HOM05D006641 ORTHO05D007573 3.6e-19 99.4 216 37.0
FvH4_5g39350 Fragaria vesca HOM05D006641 ORTHO05D007573 4.7e-19 99.0 219 37.4
Glyma.03G218800 Glycine max HOM05D006641 ORTHO05D007573 4.7e-19 99.0 200 35.5
Cpa.g.sc18.26 Carica papaya HOM05D006641 ORTHO05D007573 6.1e-19 98.6 211 36.0
Eucgr.H01054 Eucalyptus grandis HOM05D006641 ORTHO05D007573 6.1e-19 98.6 220 38.2
MD11G1315800 Malus domestica HOM05D006641 ORTHO05D007573 6.1e-19 98.6 219 35.6
FAN08G0230 Fragaria x ananassa HOM05D001136 ORTHO05D007573 8.0e-19 98.2 219 37.0
FAN08G2922 Fragaria x ananassa HOM05D006641 ORTHO05D007573 8.0e-19 98.2 219 37.0
FAN18G1732 Fragaria x ananassa HOM05D001136 ORTHO05D007573 8.0e-19 98.2 219 37.0
Psat3g020560 Pisum sativum HOM05D006641 ORTHO05D007573 1.0e-18 97.8 204 35.8
Duzib138G1609 Durio zibethinus HOM05D006641 ORTHO05D007573 1.8e-18 97.1 217 38.7
Psat6g162160 Pisum sativum HOM05D006641 ORTHO05D007573 1.8e-18 97.1 195 36.4
Duzib211G0496 Durio zibethinus HOM05D006641 ORTHO05D007573 2.3e-18 96.7 208 36.1
Sabra14G0090500 Salix brachista HOM05D006641 ORTHO05D007573 2.3e-18 96.7 203 39.4
SGA_v2.0_scaffold376G50279 Striga asiatica HOM05D006641 ORTHO05D007573 2.3e-18 96.7 208 37.0
Prupe.8G270900 Prunus persica HOM05D006641 ORTHO05D007573 3.0e-18 96.3 221 37.1
VMungo1383G0778 Vigna mungo HOM05D006641 ORTHO05D007573 3.0e-18 96.3 199 36.7
FAN04G2480 Fragaria x ananassa HOM05D001136 ORTHO05D007573 4.0e-18 95.9 219 36.1
Sabra02G0160400 Salix brachista HOM05D006641 ORTHO05D007573 4.0e-18 95.9 218 39.0
Solyc01g079550.2 Solanum lycopersicum HOM05D006641 ORTHO05D007573 4.0e-18 95.9 213 35.7
Potri.014G122100 Populus trichocarpa HOM05D006641 ORTHO05D007573 5.2e-18 95.5 213 38.5
TPR.G19761 Trifolium pratense HOM05D006641 ORTHO05D007573 5.2e-18 95.5 218 36.7
Potri.002G196900 Populus trichocarpa HOM05D006641 ORTHO05D007573 8.8e-18 94.7 215 36.7
Sopen01g031320 Solanum pennellii HOM05D006641 ORTHO05D007573 8.8e-18 94.7 213 35.2
RcHm_v2.0_Chr7g0241631 Rosa chinensis HOM05D006641 ORTHO05D007573 1.1e-17 94.4 225 36.0
VMungo0007G0001 Vigna mungo HOM05D006641 ORTHO05D007573 1.1e-17 94.4 225 35.6
Aqoxy2G01829 Aquilegia oxysepala HOM05D006641 ORTHO05D007573 1.5e-17 94.0 196 37.2
Glyma.02G013200 Glycine max HOM05D006641 ORTHO05D007573 1.5e-17 94.0 209 34.4
COL.COLO4_23247 Corchorus olitorius HOM05D006641 ORTHO05D007573 2.0e-17 93.6 223 35.4
QL12p020167 Quercus lobata HOM05D006641 ORTHO05D007573 2.0e-17 93.6 218 36.2
HanXRQChr15g0465011 Helianthus annuus HOM05D006641 ORTHO05D007573 3.3e-17 92.8 200 35.5
Lj5g0026629 Lotus japonicus HOM05D006641 ORTHO05D007573 3.3e-17 92.8 224 35.7
TAR362G0542 Trochodendron aralioides HOM05D006641 ORTHO05D007573 3.3e-17 92.8 218 33.0
Dinv33109 Davidia involucrata HOM05D006641 ORTHO05D007573 5.7e-17 92.0 213 37.6
Glyma.10G013800 Glycine max HOM05D006641 ORTHO05D007573 5.7e-17 92.0 215 35.3
Phvul.007G214900 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 5.7e-17 92.0 203 36.0
PGR119G1902 Punica granatum HOM05D006641 ORTHO05D007573 5.7e-17 92.0 232 35.8
Phvul.001G212200 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 7.5e-17 91.7 210 34.8
Medtr7g109410 Medicago truncatula HOM05D006641 ORTHO05D007573 9.7e-17 91.3 207 33.8
PSO210G6531 Papaver somniferum HOM05D006641 ORTHO05D007573 1.3e-16 90.9 218 35.8
PSO761G0656 Papaver somniferum HOM05D006641 ORTHO05D007573 2.2e-16 90.1 222 35.1
CANSAT25G1473 Cannabis sativa HOM05D006641 ORTHO05D007573 6.3e-16 88.6 230 34.8
Cc01_g21330 Coffea canephora HOM05D006641 ORTHO05D007573 1.1e-15 87.8 250 33.2
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.1e-15 87.8 198 36.4
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.4e-15 87.4 207 35.3
Actinidia27614 Actinidia chinensis HOM05D006641 ORTHO05D007573 1.8e-15 87.0 197 38.6
AUR62024668 Chenopodium quinoa HOM05D006641 ORTHO05D007573 9.1e-15 84.7 212 35.4
DCAR_002902 Daucus carota HOM05D006641 ORTHO05D007573 2.6e-14 83.2 222 34.7
AUR62011824 Chenopodium quinoa HOM05D006641 ORTHO05D007573 4.5e-14 82.4 208 31.2
Os03g0305200 Oryza sativa ssp. japonica HOM05D006641 ORTHO05D007573 4.5e-14 82.4 209 34.4
EL10As5g23515 Beta vulgaris HOM05D006641 ORTHO05D007573 5.9e-14 82.0 215 33.0
Haze_05028 Corylus avellana HOM05D006641 ORTHO05D007573 7.7e-14 81.6 201 35.8
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 7.7e-14 81.6 203 35.5
Lsat_1_v5_gn_9_2880 Lactuca sativa HOM05D006641 ORTHO05D007573 7.7e-14 81.6 207 34.3
Nn3g21666 Nelumbo nucifera HOM05D006641 ORTHO05D007573 7.7e-14 81.6 199 35.7
TAR589G0002 Trochodendron aralioides HOM05D006641 ORTHO05D007573 7.7e-14 81.6 169 37.3
TAR633G2793 Trochodendron aralioides HOM05D006641 ORTHO05D007573 7.7e-14 81.6 169 37.3
Gorai.004G144000 Gossypium raimondii HOM05D006641 ORTHO05D007573 1.3e-13 80.9 199 34.7
Gohir.A08G119133 Gossypium hirsutum HOM05D006641 ORTHO05D007573 2.2e-13 80.1 208 34.6
Gohir.D08G139900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 2.9e-13 79.7 199 34.7
Hma1.2p1_0212F.1_g090010 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 3.8e-13 79.3 216 32.9
Gohir.D12G129400 Gossypium hirsutum HOM05D006641 ORTHO05D007573 5.0e-13 79.0 186 31.7
Gorai.008G140500 Gossypium raimondii HOM05D006641 ORTHO05D007573 1.5e-12 77.4 186 31.2
Gohir.A12G125900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 9.4e-12 74.7 199 33.2
Zm00001eb014520 Zea mays HOM05D006641 ORTHO05D007573 2.7e-11 73.2 206 32.0
Zm00001eb396340 Zea mays HOM05D006641 ORTHO05D007573 2.7e-11 73.2 203 31.0
PSO357G0224 Papaver somniferum HOM05D006641 ORTHO05D007573 3.0e-10 69.7 224 32.1
PSO170G1046 Papaver somniferum HOM05D006641 ORTHO05D007573 4.0e-10 69.3 224 32.1
TPR.G4797 Trifolium pratense HOM05D006641 ORTHO05D007573 8.8e-10 68.2 160 34.4
Eucgr.K03540 Eucalyptus grandis HOM05D006641 ORTHO05D007573 1.2e-09 67.8 225 31.1
arahy.Tifrunner.gnm1.ann1.Q9I7GX Arachis hypogaea HOM05D006641 ORTHO05D007573 6.3e-08 62.0 176 31.8
Nn1g02733 Nelumbo nucifera HOM05D001935 ORTHO05D001700 1.6e-06 57.4 187 26.2
Cpa.g.sc170.5 Carica papaya HOM05D001935 ORTHO05D001700 2.7e-06 56.6 200 29.0
SEGI_04656 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 4.5e-06 55.8 101 35.6


User provided reference genes

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