Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.4e-245 851.7 412 100.0
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.9e-207 723.4 457 82.1
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.9e-205 719.2 457 81.2
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 5.6e-202 707.6 457 80.1
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 2.8e-201 705.3 457 79.6
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 4.7e-201 704.5 475 78.1
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 8.1e-201 703.7 457 79.4
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-200 703.4 470 78.1
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 1.4e-200 703.0 471 77.9
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 3.1e-200 701.8 457 79.2
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.5e-199 699.5 472 77.8
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 4.4e-199 698.0 456 78.9
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 4.4e-199 698.0 456 78.9
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.9e-197 692.6 456 78.5
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 3.2e-197 691.8 457 77.9
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 2.1e-196 689.1 475 75.8
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 8.4e-182 640.6 428 77.6
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 5.1e-179 631.3 459 71.2
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.1e-164 582.8 468 64.5
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 1.0e-163 580.5 481 63.8
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.3e-163 580.1 469 64.6
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.7e-163 577.4 469 64.4
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.9e-162 576.2 467 64.5
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 7.4e-162 574.3 469 64.0
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.6e-161 573.2 462 63.6
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-160 570.5 469 64.0
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.8e-160 569.7 471 63.1
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.0e-159 566.2 462 64.5
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 2.0e-159 566.2 463 63.9
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.0e-158 563.9 468 63.0
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 2.2e-158 562.8 469 62.7
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 3.8e-158 562.0 468 62.6
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.0e-158 561.6 469 63.5
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 6.5e-158 561.2 468 63.5
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 6.5e-158 561.2 469 63.5
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 3.2e-157 558.9 468 62.4
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 7.2e-157 557.8 465 63.0
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.6e-156 556.6 469 62.0
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 2.1e-156 556.2 468 64.3
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 2.7e-156 555.8 465 63.2
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 2.7e-156 555.8 468 62.4
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 3.6e-156 555.4 468 62.2
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 4.6e-156 555.1 468 62.8
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 4.6e-156 555.1 490 59.4
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 7.9e-156 554.3 468 61.8
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.4e-155 553.5 468 61.8
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 3.0e-155 552.4 472 62.3
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 3.0e-155 552.4 468 62.0
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 5.1e-155 551.6 471 61.1
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 8.8e-155 550.8 439 65.1
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 2.0e-154 549.7 468 61.1
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.3e-154 548.5 465 61.3
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 4.3e-154 548.5 467 61.7
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 5.7e-154 548.1 467 62.5
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.3e-153 547.0 465 61.3
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.7e-153 546.6 463 62.0
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 2.8e-153 545.8 464 62.1
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.8e-153 545.8 465 61.1
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 2.8e-153 545.8 470 62.6
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 3.7e-153 545.4 466 61.2
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 3.7e-153 545.4 469 61.8
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.8e-153 545.0 469 60.1
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.3e-153 544.7 465 61.3
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 6.3e-153 544.7 467 62.1
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 8.2e-153 544.3 469 62.0
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 7.7e-151 537.7 465 61.9
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.7e-150 536.6 463 62.2
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 6.5e-150 534.6 465 59.4
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 6.5e-150 534.6 467 61.2
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 6.5e-150 534.6 469 61.2
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.9e-149 533.1 467 60.2
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.9e-149 533.1 463 62.0
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 1.9e-149 533.1 463 62.0
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 5.5e-149 531.6 476 58.2
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 1.6e-148 530.0 455 62.6
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 2.7e-148 529.3 446 62.3
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 7.9e-148 527.7 469 59.7
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 5.1e-147 525.0 463 61.6
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.1e-146 523.9 462 60.8
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 1.5e-146 523.5 467 59.7
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.6e-146 522.7 459 62.3
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 9.7e-146 520.8 426 64.1
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.7e-145 520.0 439 62.2
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 6.3e-145 518.1 446 61.4
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 3.1e-144 515.8 467 59.5
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.2e-143 513.8 452 61.1
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 4.5e-143 511.9 467 59.1
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 5.9e-143 511.5 469 59.3
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 7.7e-143 511.1 458 60.0
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 5.0e-142 508.4 463 59.4
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.5e-141 506.9 494 54.9
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.5e-141 506.9 460 60.9
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 7.2e-141 504.6 463 57.2
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.1e-140 503.1 463 58.5
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.8e-139 500.0 547 51.6
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 5.2e-139 498.4 462 57.8
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-138 497.3 454 59.5
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.4e-136 489.6 511 51.3
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 6.5e-134 481.5 380 64.5
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 6.5e-134 481.5 427 60.2
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.5e-133 480.3 461 57.3
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 3.2e-133 479.2 429 60.1
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 4.7e-132 475.3 514 52.9
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.4e-131 473.8 444 58.6
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.4e-131 473.8 438 60.0
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.5e-130 470.3 467 55.7
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 4.1e-128 462.2 469 56.3
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 7.7e-127 458.0 382 62.8
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 9.4e-125 451.1 443 53.5
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.2e-124 450.7 363 63.9
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 1.8e-123 446.8 506 49.2
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 1.1e-120 437.6 466 51.9
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 3.1e-120 436.0 492 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.8e-116 422.9 450 50.7
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.8e-116 422.9 358 61.2
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.8e-115 418.3 350 61.1
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 3.4e-114 416.0 534 44.2
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 5.0e-110 402.1 408 55.6
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.3e-109 399.4 435 52.4
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.4e-104 384.0 415 52.3
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.2e-88 328.2 158 99.4
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.0e-86 324.7 234 69.7
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 8.9e-83 311.6 462 42.0
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.4e-80 303.5 310 57.1
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 5.1e-78 295.8 270 60.4
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.4e-75 287.7 382 44.0
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.8e-67 260.8 274 55.8
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 4.5e-66 256.1 304 49.3
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.2e-63 248.1 231 55.8
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.0e-62 243.4 263 53.6
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.1e-61 241.5 466 33.3
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 7.4e-61 238.8 441 38.3
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.1e-56 224.9 503 34.2
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 9.6e-53 211.8 396 38.1
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.5e-48 196.1 255 46.3
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 2.3e-46 190.7 181 58.6
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.8e-41 173.3 270 37.8
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.7e-39 167.2 105 75.2
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.3e-36 156.0 144 55.6
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.1e-35 153.3 248 41.5
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.7e-31 139.8 102 66.7
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.8e-30 137.9 102 65.7
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.0e-29 134.4 102 63.7
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 4.8e-28 129.8 189 42.3
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 1.4e-27 128.3 180 43.9
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.1e-27 126.7 67 91.0
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.2e-26 125.2 200 40.5
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.6e-26 124.8 118 55.9
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 3.2e-24 117.1 107 58.9
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.8e-22 111.3 143 46.9
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.5e-21 105.9 102 54.9
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 2.2e-20 104.4 125 48.8
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 7.0e-19 99.4 104 54.8
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 1.2e-18 98.6 60 76.7
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 2.1e-15 87.8 60 73.3
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 5.7e-13 79.7 81 48.1
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 4.5e-10 70.1 41 82.9
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.6e-07 60.5 39 71.8
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 8.0e-07 59.3 39 69.2


User provided reference genes

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