Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G50650 Arabidopsis lyrata HOM05D002674 ORTHO05D007700 6.1e-152 540.8 276 100.0
AT4G02425 Arabidopsis thaliana HOM05D002674 ORTHO05D007700 3.4e-110 402.1 224 94.2
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 8.3e-109 397.5 223 92.4
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 3.1e-103 379.0 235 86.8
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 2.2e-93 346.3 224 83.0
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 1.1e-89 334.0 223 82.5
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 1.1e-87 327.4 222 82.4
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 4.0e-87 325.5 225 80.0
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 4.0e-87 325.5 225 80.0
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 1.2e-86 323.9 230 78.3
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 2.0e-86 323.2 224 79.9
THA.LOC104815928 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 3.9e-74 282.3 234 69.2
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 4.3e-73 278.9 192 81.8
THA.LOC104825970 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 9.6e-73 277.7 233 69.5
Aa31LG1G9740 Aethionema arabicum HOM05D002674 ORTHO05D007700 3.2e-68 262.7 231 68.0
Carub.0001s0195 Capsella rubella HOM05D002674 ORTHO05D007700 1.2e-67 260.8 229 69.9
Thecc.01G299900 Theobroma cacao HOM05D002674 ORTHO05D007700 4.9e-61 238.8 237 65.0
COL.COLO4_23350 Corchorus olitorius HOM05D002674 ORTHO05D007700 1.9e-60 236.9 237 64.1
MD11G1310500 Malus domestica HOM05D002674 ORTHO05D007700 4.2e-60 235.7 235 63.0
Prupe.8G261000 Prunus persica HOM05D002674 ORTHO05D007700 9.3e-60 234.6 246 62.2
Atru.chr5.1151 Acer truncatum HOM05D002674 ORTHO05D007700 1.2e-59 234.2 243 61.3
MD03G1287800 Malus domestica HOM05D002674 ORTHO05D007700 2.1e-59 233.4 235 61.3
Duzib138G1545 Durio zibethinus HOM05D002674 ORTHO05D007700 4.6e-59 232.3 236 61.9
Ciclev10021537m.g Citrus clementina HOM05D002674 ORTHO05D007700 6.7e-58 228.4 245 60.0
Gorai.004G089800 Gossypium raimondii HOM05D002674 ORTHO05D007700 6.7e-58 228.4 229 62.0
FAN27G2781 Fragaria x ananassa HOM05D002674 ORTHO05D007700 8.7e-58 228.0 229 62.0
ClCG10G010900 Citrullus lanatus HOM05D002674 ORTHO05D007700 1.1e-57 227.6 238 59.7
Gohir.A08G075900 Gossypium hirsutum HOM05D002674 ORTHO05D007700 1.1e-57 227.6 229 62.0
Gohir.D08G085300 Gossypium hirsutum HOM05D002674 ORTHO05D007700 1.5e-57 227.3 229 61.6
Aa31LG5G2060 Aethionema arabicum HOM05D002674 ORTHO05D007700 1.6e-56 223.8 239 63.6
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 4.8e-56 222.2 229 62.0
Actinidia24347 Actinidia chinensis HOM05D002674 ORTHO05D007700 1.4e-55 220.7 229 60.7
TWI23G1032 Tripterygium wilfordii HOM05D002674 ORTHO05D007700 1.4e-55 220.7 232 62.1
MELO3C017958.2 Cucumis melo HOM05D002674 ORTHO05D007700 2.0e-54 216.9 239 57.3
CsaV3_4G000780 Cucumis sativus L. HOM05D002674 ORTHO05D007700 2.0e-54 216.9 239 57.3
CANSAT25G1821 Cannabis sativa HOM05D002674 ORTHO05D007700 2.6e-54 216.5 245 58.0
Lj1A25T5 Lonicera japonica HOM05D002674 ORTHO05D007700 3.4e-54 216.1 241 58.9
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 7.6e-54 214.9 249 57.8
Eucgr.K03478 Eucalyptus grandis HOM05D002674 ORTHO05D007700 1.0e-53 214.5 237 60.3
QL12p028514 Quercus lobata HOM05D002674 ORTHO05D007700 1.4e-52 210.7 257 54.9
CiPaw.07G108400 Carya illinoinensis HOM05D002674 ORTHO05D007700 3.2e-52 209.5 227 61.2
Glyma.02G018300 Glycine max HOM05D002674 ORTHO05D007700 4.2e-52 209.1 224 59.4
Psat6g166040 Pisum sativum HOM05D002674 ORTHO05D007700 5.5e-52 208.8 224 57.6
Sabra14G0096100 Salix brachista HOM05D002674 ORTHO05D007700 5.5e-52 208.8 255 56.1
Ca_10339_v3 Cicer arietinum L. HOM05D002674 ORTHO05D007700 9.3e-52 208.0 229 57.2
TAR365G1234 Trochodendron aralioides HOM05D002674 ORTHO05D007700 1.6e-51 207.2 235 58.7
Potri.014G129500 Populus trichocarpa HOM05D002674 ORTHO05D007700 1.0e-50 204.5 255 56.5
Glyma.10G018600 Glycine max HOM05D002674 ORTHO05D007700 7.4e-49 198.4 251 53.8
Manes.01G218600 Manihot esculenta HOM05D002674 ORTHO05D007700 7.4e-49 198.4 228 57.5
Lj5g0010238 Lotus japonicus HOM05D002674 ORTHO05D007700 1.6e-48 197.2 235 57.0
FvH4_2g25690 Fragaria vesca HOM05D002674 ORTHO05D007700 2.8e-48 196.4 232 56.0
FAN15G1012 Fragaria x ananassa HOM05D002674 ORTHO05D007700 2.8e-48 196.4 232 56.0
FAN24G1157 Fragaria x ananassa HOM05D002674 ORTHO05D007700 2.8e-48 196.4 232 56.0
FAN20G3185 Fragaria x ananassa HOM05D002674 ORTHO05D007700 6.3e-48 195.3 232 56.0
Phvul.007G146100 Phaseolus vulgaris HOM05D002674 ORTHO05D007700 6.3e-48 195.3 225 56.9
Aqoxy5G00752 Aquilegia oxysepala HOM05D002674 ORTHO05D007700 1.4e-47 194.1 240 54.2
Sed0013149 Sechium edule HOM05D002674 ORTHO05D007700 2.4e-47 193.4 219 55.3
VMungo0720G0138 Vigna mungo HOM05D002674 ORTHO05D007700 3.1e-47 193.0 225 56.4
Cfa005916 Carpinus fangiana HOM05D002674 ORTHO05D007700 5.3e-47 192.2 241 54.8
Potri.002G204700 Populus trichocarpa HOM05D002674 ORTHO05D007700 2.0e-46 190.3 253 54.2
RcHm_v2.0_Chr6g0293961 Rosa chinensis HOM05D002674 ORTHO05D007700 2.0e-46 190.3 241 54.4
CSS0049735 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 7.7e-46 188.3 237 54.9
HanXRQChr10g0284651 Helianthus annuus HOM05D002674 ORTHO05D007700 7.7e-46 188.3 260 50.8
Medtr1g088580 Medicago truncatula HOM05D002674 ORTHO05D007700 7.7e-46 188.3 228 53.5
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 1.0e-45 188.0 285 48.1
MBI19_g25354_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D007700 3.8e-45 186.0 248 50.8
Lsat_1_v5_gn_7_11800 Lactuca sativa HOM05D002674 ORTHO05D007700 5.0e-45 185.7 249 52.2
Lsat_1_v5_gn_9_5620 Lactuca sativa HOM05D002674 ORTHO05D007700 5.0e-45 185.7 249 52.2
TPR.G34010 Trifolium pratense HOM05D002674 ORTHO05D007700 1.1e-44 184.5 224 52.7
Rhsim01G0243300 Rhododendron simsii HOM05D002674 ORTHO05D007700 3.2e-44 183.0 242 54.1
Nitab4.5_0002470g0100 Nicotiana tabacum HOM05D002674 ORTHO05D007700 5.5e-44 182.2 238 53.8
CSS0000533 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 6.1e-43 178.7 233 52.4
TAR636G1278 Trochodendron aralioides HOM05D002674 ORTHO05D007700 7.9e-43 178.3 241 53.1
SGA_v2.0_scaffold1G00369 Striga asiatica HOM05D002674 ORTHO05D007700 1.8e-42 177.2 222 55.9
Cc01_g20810 Coffea canephora HOM05D002674 ORTHO05D007700 8.8e-42 174.9 232 54.3
Hma1.2p1_0491F.1_g164500 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 2.5e-41 173.3 167 63.5
Nitab4.5_0005805g0020 Nicotiana tabacum HOM05D002674 ORTHO05D007700 3.3e-41 172.9 239 51.9
Migut.D00215 Erythranthe guttata HOM05D002674 ORTHO05D007700 1.7e-40 170.6 222 55.4
HPP92_025205 Vanilla planifolia HOM05D002674 ORTHO05D007700 2.2e-40 170.2 233 52.8
arahy.Tifrunner.gnm1.ann1.2P60TQ Arachis hypogaea HOM05D002674 ORTHO05D007700 2.8e-40 169.9 235 51.1
vmacro15007 Vaccinium macrocarpon HOM05D002674 ORTHO05D007700 3.7e-40 169.5 243 53.1
arahy.Tifrunner.gnm1.ann1.YN8C8B Arachis hypogaea HOM05D002674 ORTHO05D007700 5.3e-39 165.6 235 49.8
Sc24g0003790 Simmondsia chinensis HOM05D002674 ORTHO05D007700 2.6e-38 163.3 239 52.3
Nn3g21481 Nelumbo nucifera HOM05D002674 ORTHO05D007700 1.3e-37 161.0 156 62.2
CDE11G0633 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 1.7e-37 160.6 247 47.0
DCAR_002828 Daucus carota HOM05D002674 ORTHO05D007700 2.2e-37 160.2 242 48.3
Ah.15g093240 Amaranthus hybridus HOM05D002674 ORTHO05D007700 2.9e-37 159.8 251 50.6
EL10Ac7g17509 Beta vulgaris HOM05D002674 ORTHO05D007700 2.9e-37 159.8 257 49.8
Lalb_Chr06g0163511 Lupinus albus HOM05D002674 ORTHO05D007700 6.5e-37 158.7 222 50.9
PSO832G4034 Papaver somniferum HOM05D002674 ORTHO05D007700 8.5e-37 158.3 257 46.3
Hund18157 Selenicereus undatus HOM05D002674 ORTHO05D007700 1.4e-36 157.5 236 48.7
PGSC0003DMG402017938 Solanum tuberosum HOM05D002674 ORTHO05D007700 1.4e-36 157.5 234 49.6
unitig_22.g5241 Utricularia gibba HOM05D002674 ORTHO05D007700 1.4e-36 157.5 224 52.2
Sopen06g003880 Solanum pennellii HOM05D002674 ORTHO05D007700 1.9e-36 157.1 234 49.6
Solyc06g009120.3 Solanum lycopersicum HOM05D002674 ORTHO05D007700 3.2e-36 156.4 234 49.6
CDE05G2513 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 7.2e-36 155.2 224 50.0
Oeu054122.1 Olea europaea HOM05D002674 ORTHO05D007700 1.2e-35 154.5 175 59.4
Peaxi162Scf00399g00714 Petunia axillaris HOM05D002674 ORTHO05D007700 1.2e-35 154.5 262 47.3
Oeu053149.1 Olea europaea HOM05D002674 ORTHO05D007700 1.6e-27 127.5 177 51.4
ECA247G3124 Erigeron canadensis HOM05D002674 ORTHO05D007700 1.8e-26 124.0 224 42.9
BolC6t36475H Brassica oleracea HOM05D000186 ORTHO05D015008 2.3e-26 123.6 82 78.0
BcaC03g16430 Brassica carinata HOM05D002674 ORTHO05D007700 2.0e-25 120.6 83 74.7
ATR0796G100 Amborella trichopoda HOM05D002674 ORTHO05D007700 2.8e-24 116.7 234 42.7
CAN.G1280.1 Capsicum annuum HOM05D002674 ORTHO05D007700 7.0e-23 112.1 238 42.0
AUR62033139 Chenopodium quinoa HOM05D002674 ORTHO05D007700 9.1e-23 111.7 177 50.3
Hma1.2p1_0491F.1_g164510 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 2.6e-22 110.2 108 63.0
SEGI_12569 Sequoiadendron giganteum HOM05D002674 ORTHO05D007700 2.9e-21 106.7 248 38.3
AUR62008632 Chenopodium quinoa HOM05D002674 ORTHO05D007700 5.0e-21 105.9 140 52.9
HPP92_006921 Vanilla planifolia HOM05D002674 ORTHO05D007700 1.5e-20 104.4 225 41.8
C05p48610 Brassica napus HOM05D002674 ORTHO05D007700 3.2e-20 103.2 74 70.3
C08p25960 Brassica napus HOM05D002674 ORTHO05D007700 3.2e-20 103.2 74 70.3
BcaB07g32361 Brassica carinata HOM05D002674 ORTHO05D007700 5.5e-20 102.4 78 71.8
C02p62500 Brassica napus HOM05D002674 ORTHO05D007700 5.5e-20 102.4 67 77.6
BolC9t55650H Brassica oleracea HOM05D002674 ORTHO05D007700 1.0e-18 98.2 63 79.4
CANSAT56G3445 Cannabis sativa HOM05D002674 ORTHO05D007700 1.0e-18 98.2 91 61.5
BolC1t01853H Brassica oleracea HOM05D002674 ORTHO05D007700 3.0e-18 96.7 74 67.6
C09p27860 Brassica napus HOM05D002674 ORTHO05D007700 3.3e-17 93.2 63 76.2
Zm00001eb127170 Zea mays HOM05D002674 ORTHO05D007700 3.1e-15 86.7 200 40.5
Zm00001eb018450 Zea mays HOM05D002674 ORTHO05D007700 3.5e-14 83.2 204 40.2
A09p66240 Brassica napus HOM05D002674 ORTHO05D007700 8.5e-13 78.6 45 77.8
Os01g0316500 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D007700 8.5e-13 78.6 135 45.9
Zm00001eb285590 Zea mays HOM05D002674 ORTHO05D007700 1.1e-12 78.2 196 38.8
BcaB04g18179 Brassica carinata HOM05D002674 ORTHO05D007700 7.2e-12 75.5 42 81.0
C02p42550 Brassica napus HOM05D000186 ORTHO05D015008 2.1e-11 73.9 38 86.8
A08p09760 Brassica napus HOM05D002674 ORTHO05D007700 2.7e-11 73.6 42 78.6
BraA08t32971Z Brassica rapa HOM05D002674 ORTHO05D007700 2.7e-11 73.6 42 78.6
C06p13190 Brassica napus HOM05D002674 ORTHO05D015008 8.0e-11 72.0 38 84.2
BcaB06g28993 Brassica carinata HOM05D002674 ORTHO05D007700 2.3e-10 70.5 38 84.2
BcaB06g27116 Brassica carinata HOM05D002674 ORTHO05D094085 5.7e-09 65.9 76 50.0


User provided reference genes

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