Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 1.1e-192 676.4 328 100.0
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 2.9e-177 625.2 338 91.1
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 3.4e-170 601.7 336 85.7
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 7.7e-170 600.5 329 87.8
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 3.0e-158 562.0 365 78.6
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 2.4e-155 552.4 340 82.4
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 2.3e-150 535.8 336 79.5
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 1.9e-144 516.2 398 67.1
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 9.4e-144 513.8 396 68.2
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 1.0e-142 510.4 412 63.8
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 1.2e-141 506.9 415 65.3
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 1.5e-141 506.5 412 63.8
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 2.3e-134 482.6 336 69.9
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 4.4e-125 451.8 334 65.3
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 9.2e-123 444.1 341 64.8
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 9.2e-123 444.1 338 63.3
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 9.2e-123 444.1 334 65.6
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 9.2e-123 444.1 340 64.4
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 7.8e-122 441.0 350 66.9
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 3.0e-121 439.1 343 64.7
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 3.0e-121 439.1 343 64.7
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 1.5e-120 436.8 341 63.0
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 4.3e-120 435.3 343 64.4
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 1.6e-119 433.3 341 63.0
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 3.6e-119 432.2 347 62.2
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 6.2e-119 431.4 345 62.3
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 8.1e-119 431.0 339 64.3
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 1.8e-118 429.9 335 65.7
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.8e-118 429.9 340 63.5
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 6.8e-118 427.9 331 62.8
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 1.5e-117 426.8 343 63.0
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 1.5e-117 426.8 339 64.0
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 4.4e-117 425.2 343 62.7
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 5.8e-117 424.9 338 61.5
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 9.8e-117 424.1 343 61.5
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 1.3e-116 423.7 343 62.7
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 1.3e-116 423.7 347 61.1
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 2.2e-116 422.9 352 60.2
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 1.1e-115 420.6 345 62.0
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 1.4e-115 420.2 337 61.7
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 1.9e-115 419.9 279 74.6
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 1.9e-115 419.9 329 61.7
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 7.1e-115 417.9 351 59.3
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 2.1e-114 416.4 342 60.8
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 2.7e-114 416.0 337 61.7
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 7.8e-114 414.5 341 60.1
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 1.3e-113 413.7 335 60.3
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 1.3e-113 413.7 332 60.8
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 1.7e-113 413.3 321 63.9
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.7e-113 413.3 339 61.1
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 2.3e-113 412.9 339 60.8
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 3.9e-113 412.1 358 58.1
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 6.6e-113 411.4 344 60.2
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 8.6e-113 411.0 338 60.9
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 1.1e-112 410.6 345 60.9
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 1.1e-112 410.6 345 60.9
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 1.5e-112 410.2 334 60.8
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 2.5e-112 409.5 330 62.7
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 7.3e-112 407.9 345 61.2
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 1.6e-111 406.8 334 59.3
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 2.1e-111 406.4 339 60.2
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.1e-111 406.4 338 58.6
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 4.7e-111 405.2 354 58.8
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 6.2e-111 404.8 333 60.4
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 8.1e-111 404.4 337 59.6
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 1.8e-110 403.3 346 60.1
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 1.8e-110 403.3 344 59.9
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 4.0e-110 402.1 339 59.9
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 6.8e-110 401.4 349 57.9
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 8.9e-110 401.0 334 60.2
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.5e-109 400.2 332 59.6
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 1.5e-109 400.2 340 59.4
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 2.0e-109 399.8 330 59.7
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 1.3e-108 397.1 344 57.8
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 8.4e-108 394.4 346 56.9
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 1.1e-107 394.0 332 58.1
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 1.6e-106 390.2 323 58.8
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 6.0e-106 388.3 335 58.8
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 1.0e-105 387.5 345 55.9
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.1e-105 385.2 319 58.3
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 5.1e-105 385.2 323 58.2
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 1.5e-104 383.6 345 55.9
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 1.2e-103 380.6 367 54.0
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 4.7e-103 378.6 346 54.0
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 8.1e-103 377.9 334 56.9
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 1.4e-102 377.1 366 53.8
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 3.4e-101 372.5 328 57.9
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 2.4e-99 366.3 327 57.2
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.5e-96 357.1 320 58.8
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 9.6e-96 354.4 337 53.7
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 1.3e-95 354.0 331 53.2
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 1.3e-95 354.0 306 59.8
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 3.1e-94 349.4 327 53.8
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 4.5e-93 345.5 284 61.6
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 9.9e-93 344.4 426 44.1
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 1.7e-92 343.6 298 58.7
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 2.9e-92 342.8 328 52.7
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 6.4e-92 341.7 334 52.4
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 7.1e-91 338.2 326 52.8
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 9.3e-91 337.8 287 61.0
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 3.0e-89 332.8 293 56.7
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 2.5e-88 329.7 334 52.1
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 4.8e-87 325.5 324 51.9
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 4.8e-87 325.5 330 50.9
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 1.7e-84 317.0 318 50.0
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 2.4e-83 313.2 327 50.8
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 4.2e-83 312.4 323 49.5
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 4.2e-83 312.4 323 49.5
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 4.2e-83 312.4 327 49.2
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.1e-78 297.7 251 61.0
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 2.5e-75 286.6 328 44.5
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 3.5e-74 282.7 368 41.8
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 4.6e-74 282.3 367 42.8
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 8.7e-73 278.1 425 38.1
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 1.1e-72 277.7 341 44.3
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 3.3e-72 276.2 496 34.5
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 4.3e-72 275.8 403 40.9
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 5.9e-69 265.4 323 44.0
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 7.6e-69 265.0 320 44.1
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 1.0e-68 264.6 175 70.9
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 6.5e-68 261.9 326 43.3
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 6.1e-66 255.4 328 43.6
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 8.7e-65 251.5 331 42.6
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 3.3e-64 249.6 331 43.2
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 4.8e-63 245.7 425 35.8
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 7.9e-58 228.4 321 39.3
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 1.1e-48 198.0 426 31.7
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 1.8e-46 190.7 232 47.8
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 8.0e-42 175.3 220 45.9
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 6.7e-41 172.2 193 46.6
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 3.3e-40 169.9 100 76.0
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 1.2e-29 134.8 203 40.4
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 1.4e-22 111.3 254 28.7
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.0e-20 105.1 166 42.8
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 5.0e-20 102.8 127 48.0
arahy.Tifrunner.gnm1.ann1.56XWA4 Arachis hypogaea HOM05D002394 ORTHO05D002508 1.2e-08 65.1 324 23.1
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 7.5e-08 62.4 92 42.4
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 1.7e-07 61.2 135 31.9
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 2.9e-07 60.5 52 55.8
Aa31LG11G14140 Aethionema arabicum HOM05D002394 ORTHO05D002508 1.9e-06 57.8 128 33.6
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 1.9e-06 57.8 334 22.2
CiPaw.04G058200 Carya illinoinensis HOM05D002394 ORTHO05D002508 3.2e-06 57.0 320 21.6
Lalb_Chr06g0175081 Lupinus albus HOM05D002394 ORTHO05D002508 3.2e-06 57.0 127 31.5
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 3.2e-06 57.0 129 34.1
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 5.4e-06 56.2 129 31.8
arahy.Tifrunner.gnm1.ann1.GVJS70 Arachis hypogaea HOM05D002394 ORTHO05D002508 5.4e-06 56.2 120 30.8
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 5.4e-06 56.2 129 31.8
SEGI_32380 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 5.4e-06 56.2 142 28.9
Zm00001eb326680 Zea mays HOM05D002394 ORTHO05D002508 5.4e-06 56.2 124 32.3
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 7.0e-06 55.8 129 31.8
Psat3g200840 Pisum sativum HOM05D002394 ORTHO05D002508 7.0e-06 55.8 127 29.9
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 7.0e-06 55.8 129 31.8
HanXRQChr15g0488711 Helianthus annuus HOM05D002394 ORTHO05D002508 9.2e-06 55.5 326 22.4


User provided reference genes

Program Settings