Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 0.0e+00 1743.4 954 100.0
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 0.0e+00 1639.8 956 94.8
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 0.0e+00 1517.3 956 85.0
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 0.0e+00 1494.2 959 84.7
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 0.0e+00 1398.6 955 81.9
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 0.0e+00 1386.3 963 81.1
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 0.0e+00 1338.2 969 79.7
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 0.0e+00 1338.2 969 79.7
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 0.0e+00 1336.2 970 79.8
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 0.0e+00 1336.2 970 79.8
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 0.0e+00 1330.1 963 77.9
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 0.0e+00 1320.1 954 80.0
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 0.0e+00 1100.9 1030 64.2
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 5.6e-306 1054.3 1005 62.3
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 1.8e-211 740.3 1089 45.3
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 4.9e-209 732.3 1097 46.3
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 3.3e-205 719.5 908 49.6
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 4.0e-203 712.6 1093 44.4
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 1.7e-201 707.2 1009 46.1
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 3.2e-200 703.0 1034 45.8
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 3.5e-199 699.5 1058 44.9
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 1.0e-198 698.0 1067 45.1
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 3.0e-198 696.4 1061 45.3
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 3.3e-197 693.0 1032 45.6
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 3.7e-196 689.5 1065 44.7
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 4.8e-196 689.1 895 47.8
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 2.9e-193 679.9 1017 44.7
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 1.6e-191 674.1 1017 44.2
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 8.2e-188 661.8 901 46.4
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 6.9e-187 658.7 975 44.7
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 3.4e-186 656.4 877 48.5
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 3.2e-184 649.8 995 43.2
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 1.2e-183 647.9 802 49.1
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 2.1e-183 647.1 1069 43.5
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 7.9e-183 645.2 1125 41.1
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 1.1e-181 641.3 1005 43.6
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 5.7e-181 639.0 1049 43.6
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 2.2e-180 637.1 822 49.0
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 2.8e-180 636.7 1067 41.6
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 1.1e-179 634.8 792 49.2
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 6.9e-179 632.1 1099 41.7
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 3.4e-178 629.8 945 44.2
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 5.0e-177 625.9 986 43.7
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 2.1e-175 620.5 912 45.4
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 1.8e-174 617.5 964 43.9
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 2.3e-174 617.1 1073 40.3
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 6.7e-174 615.5 793 47.7
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 3.3e-173 613.2 954 44.3
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 4.3e-173 612.8 1121 39.9
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 5.7e-173 612.5 1078 40.8
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 4.8e-172 609.4 984 42.6
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 6.3e-172 609.0 812 47.0
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 5.3e-171 605.9 831 48.4
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 2.6e-170 603.6 1009 42.1
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 4.5e-170 602.8 773 50.2
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 1.0e-169 601.7 793 48.2
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 3.8e-169 599.7 1031 40.0
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 6.5e-169 599.0 971 43.0
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 1.1e-168 598.2 1031 42.1
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 2.5e-168 597.0 994 41.4
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 2.1e-167 594.0 1016 42.0
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 1.8e-166 590.9 1015 42.8
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 6.7e-166 589.0 854 45.4
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 6.7e-166 589.0 1043 40.6
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 1.3e-164 584.7 1061 39.9
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 1.3e-161 574.7 807 48.2
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 1.1e-160 571.6 789 46.9
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 1.5e-160 571.2 669 52.5
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 2.5e-160 570.5 1050 39.5
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.6e-159 567.8 1151 38.2
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 2.3e-158 563.9 821 45.2
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 9.7e-157 558.5 842 43.7
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 1.3e-156 558.1 1001 39.9
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 3.7e-156 556.6 884 41.9
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 2.6e-154 550.4 968 40.9
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.3e-153 548.1 1123 38.0
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 2.5e-152 543.9 991 41.6
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 1.6e-151 541.2 837 44.3
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 8.0e-151 538.9 1013 39.8
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 6.8e-150 535.8 1005 41.2
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 1.2e-149 535.0 1002 42.5
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 1.4e-147 528.1 827 43.5
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 1.1e-144 518.5 781 44.8
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 5.5e-144 516.2 899 42.3
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 4.0e-142 510.0 1069 37.5
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 8.3e-140 502.3 992 38.7
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 5.4e-139 499.6 1027 37.3
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 2.0e-138 497.7 745 44.0
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 1.0e-137 495.4 697 46.9
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 1.0e-134 485.3 705 44.0
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 4.4e-133 479.9 828 40.7
Lalb_Chr18g0047271 Lupinus albus HOM05D002567 ORTHO05D006538 1.7e-132 478.0 503 55.3
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 2.9e-132 477.2 813 41.7
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 6.8e-126 456.1 825 40.5
Lj2C1188T12 Lonicera japonica HOM05D002567 ORTHO05D006538 1.3e-124 451.8 453 58.9
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 2.4e-123 447.6 811 38.1
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 2.5e-120 437.6 906 36.8
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 3.2e-115 420.6 815 37.9
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 4.6e-114 416.8 832 37.7
TAR633G1653 Trochodendron aralioides HOM05D002567 ORTHO05D006538 4.3e-112 410.2 390 59.7
MBI19_g13122_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.5e-109 401.7 669 43.8
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 9.9e-109 399.1 458 50.0
Peaxi162Scf00067g01812 Petunia axillaris HOM05D002567 ORTHO05D006538 2.0e-101 374.8 442 51.6
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 3.2e-91 340.9 973 33.8
Solyc09g074690.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 6.9e-86 323.2 288 60.1
Actinidia28538 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.5e-75 288.1 323 53.3
Os01g0934300 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D006538 7.4e-72 276.6 334 49.4
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 2.6e-69 268.1 782 32.0
Oeu011428.1 Olea europaea HOM05D002567 ORTHO05D006538 1.0e-57 229.6 210 59.0
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.2e-52 211.8 424 39.4
Eucgr.H01192 Eucalyptus grandis HOM05D002567 ORTHO05D006538 1.4e-46 192.6 162 67.9
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 5.0e-44 184.1 562 31.7
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 6.5e-44 183.7 409 36.4
Peaxi162Scf00067g01813 Petunia axillaris HOM05D002567 ORTHO05D006538 1.5e-43 182.6 430 34.2
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 2.2e-39 168.7 212 48.1
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 2.4e-38 165.2 1050 24.4
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 2.4e-38 165.2 175 53.1
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 4.1e-38 164.5 196 51.0
BcaB01g02031 Brassica carinata HOM05D002567 ORTHO05D006538 1.9e-35 155.6 550 31.1
Psat0s3384g0160 Pisum sativum HOM05D002567 ORTHO05D006538 5.4e-30 137.5 163 49.1
Actinidia02761 Actinidia chinensis HOM05D002567 ORTHO05D006538 5.9e-29 134.0 146 50.0
BcaC04g23997 Brassica carinata HOM05D002567 ORTHO05D006538 2.2e-28 132.1 77 83.1
CBR_g48346 Chara braunii HOM05D002567 ORTHO05D006538 1.7e-23 115.9 427 30.0
MBI01_g23938_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 6.3e-23 114.0 108 56.5
SMO119G0396 Selaginella moellendorffii HOM05D002567 ORTHO05D006538 7.0e-22 110.5 225 33.8
MBI05_g31851_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 2.3e-20 105.5 103 52.4
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.3e-19 101.7 111 52.3
Actinidia02760 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.3e-17 95.5 67 71.6
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 4.1e-14 84.7 66 60.6
MBI02_g41934_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 4.6e-13 81.3 52 71.2
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.5e-11 76.3 218 28.9
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 5.6e-11 74.3 73 47.9
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 8.9e-09 67.0 209 28.7
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 2.0e-08 65.9 204 30.9
Actinidia02762 Actinidia chinensis HOM05D002567 ORTHO05D006538 9.8e-08 63.5 93 44.1
CBR_g36670 Chara braunii HOM05D002848 ORTHO05D003043 1.4e-06 59.7 106 33.0
Phvul.002G110100 Phaseolus vulgaris HOM05D002848 ORTHO05D003043 3.2e-06 58.5 86 43.0
BolC8t49614H Brassica oleracea HOM05D002848 ORTHO05D003043 7.0e-06 57.4 215 28.4
Gohir.D01G099400 Gossypium hirsutum HOM05D002848 ORTHO05D003043 9.2e-06 57.0 71 45.1
Gorai.002G124700 Gossypium raimondii HOM05D002848 ORTHO05D003043 9.2e-06 57.0 71 45.1
Lj2g0018127 Lotus japonicus HOM05D002848 ORTHO05D003043 9.2e-06 57.0 94 43.6


User provided reference genes

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