Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 2.7e-112 408.7 206 100.0
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 8.7e-103 377.1 206 94.7
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 1.6e-101 372.9 206 92.7
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 1.1e-94 350.1 207 87.4
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 1.3e-93 346.7 206 87.4
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 7.6e-91 337.4 206 85.9
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 2.5e-81 305.8 210 79.0
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 6.9e-76 287.7 208 77.9
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 8.5e-74 280.8 208 77.4
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 2.6e-59 232.6 205 67.8
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 1.0e-58 230.7 205 67.3
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.4e-55 220.3 196 67.3
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 3.9e-55 218.8 210 64.8
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 3.9e-55 218.8 210 64.8
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 8.8e-55 217.6 207 64.3
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 9.7e-54 214.2 214 59.8
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.7e-53 213.4 214 59.8
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 3.8e-50 202.2 207 62.3
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 2.5e-49 199.5 207 61.8
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 1.8e-44 183.3 196 59.7
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 9.1e-44 181.0 196 59.2
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 1.0e-42 177.6 214 50.5
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 2.5e-41 172.9 213 49.3
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 3.0e-39 166.0 210 49.5
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 3.4e-38 162.5 223 45.7
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.4e-38 162.5 206 50.5
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.7e-38 161.8 206 50.0
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.7e-38 161.8 206 50.0
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 9.8e-38 161.0 209 50.7
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 1.7e-37 160.2 214 46.3
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 2.2e-37 159.8 217 47.0
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 6.3e-37 158.3 212 46.7
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 8.3e-37 157.9 210 47.6
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 8.3e-37 157.9 219 46.6
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 8.3e-37 157.9 217 47.0
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 8.3e-37 157.9 211 47.4
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 1.4e-36 157.1 213 46.5
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.4e-36 157.1 219 46.1
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.4e-36 156.4 215 47.4
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 3.1e-36 156.0 214 46.7
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 5.4e-36 155.2 207 45.9
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 7.0e-36 154.8 215 44.7
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 9.1e-36 154.5 208 46.6
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 1.6e-35 153.7 209 46.9
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.6e-35 153.7 206 48.5
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 2.0e-35 153.3 219 44.3
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 2.7e-35 152.9 217 44.2
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 2.7e-35 152.9 212 45.8
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 4.5e-35 152.1 208 48.6
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 4.5e-35 152.1 212 45.8
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.5e-35 152.1 217 47.0
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 7.7e-35 151.4 215 46.5
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 7.7e-35 151.4 228 45.2
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 1.0e-34 151.0 221 45.7
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 1.0e-34 151.0 208 49.0
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.0e-34 151.0 205 48.3
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.7e-34 150.2 213 45.5
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.9e-34 149.4 211 45.0
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 8.6e-34 147.9 208 47.1
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 1.1e-33 147.5 218 44.5
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.5e-33 147.1 218 45.0
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.5e-33 147.1 206 46.1
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.5e-33 147.1 212 47.2
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 7.2e-33 144.8 206 46.6
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 7.2e-33 144.8 208 48.1
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.2e-32 144.1 205 45.9
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 2.8e-32 142.9 206 45.1
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.6e-32 142.5 205 45.9
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 3.6e-32 142.5 217 45.6
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.7e-32 142.1 206 46.6
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.7e-32 142.1 208 43.8
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 6.1e-32 141.7 206 45.1
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 6.1e-32 141.7 212 47.2
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 8.0e-32 141.4 218 46.8
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.0e-31 141.0 216 44.9
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.4e-31 140.6 219 43.4
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.8e-31 140.2 212 42.5
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.8e-31 140.2 206 45.6
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 2.3e-31 139.8 207 43.5
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.0e-31 139.4 204 44.1
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 3.0e-31 139.4 213 45.5
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 4.0e-31 139.0 207 43.0
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 6.8e-31 138.3 214 47.2
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 8.9e-31 137.9 209 46.4
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 8.9e-31 137.9 208 45.2
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.2e-30 137.5 227 43.6
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 1.5e-30 137.1 210 44.8
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.6e-30 136.3 204 43.6
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 2.6e-30 136.3 226 44.7
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 4.4e-30 135.6 87 82.8
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 5.7e-30 135.2 222 45.0
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 9.8e-30 134.4 218 42.7
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.3e-29 134.0 209 44.0
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.3e-29 134.0 210 45.7
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.7e-29 133.7 216 43.1
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 1.7e-29 133.7 211 44.5
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 2.2e-29 133.3 214 41.6
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 2.8e-29 132.9 213 43.7
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 3.7e-29 132.5 213 45.1
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 4.9e-29 132.1 223 42.2
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 6.3e-29 131.7 207 44.4
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 1.1e-28 131.0 187 46.0
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.4e-28 130.6 211 45.0
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.4e-28 130.6 211 45.0
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 2.4e-28 129.8 210 42.9
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 2.4e-28 129.8 210 44.3
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 3.1e-28 129.4 207 42.5
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 5.4e-28 128.6 212 41.5
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.0e-27 126.7 182 42.9
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 2.7e-27 126.3 238 39.9
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 4.5e-27 125.6 200 42.5
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 4.5e-27 125.6 219 41.1
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 4.5e-27 125.6 211 40.8
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 5.9e-27 125.2 216 39.4
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.0e-26 124.4 218 41.7
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.3e-26 124.0 208 41.8
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.3e-26 124.0 206 41.7
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 1.3e-26 124.0 205 40.5
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 2.9e-26 122.9 224 40.2
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 3.8e-26 122.5 224 42.4
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 3.8e-26 122.5 191 46.1
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 5.0e-26 122.1 204 40.2
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 6.6e-26 121.7 217 41.5
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 6.6e-26 121.7 215 40.0
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 1.9e-25 120.2 219 40.2
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 1.9e-25 120.2 207 40.6
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 5.6e-25 118.6 211 38.9
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 7.3e-25 118.2 217 40.6
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.2e-24 117.5 219 37.4
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 2.1e-24 116.7 223 40.8
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 2.1e-24 116.7 218 39.0
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.1e-24 116.7 178 44.4
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 3.6e-24 115.9 223 40.8
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 6.1e-24 115.2 199 42.2
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 6.1e-24 115.2 228 39.5
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 8.0e-24 114.8 75 78.7
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.0e-23 114.4 210 39.5
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 4.0e-23 112.5 217 38.7
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 6.8e-23 111.7 220 36.8
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.2e-22 110.9 206 38.8
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.2e-22 110.9 210 40.5
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 2.0e-22 110.2 209 38.3
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 2.6e-22 109.8 202 41.1
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 1.7e-21 107.1 61 80.3
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 6.4e-21 105.1 210 36.2
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 8.3e-21 104.8 227 39.6
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 7.8e-19 98.2 210 37.6
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 1.0e-18 97.8 226 37.6
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 2.3e-18 96.7 210 36.7
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 3.0e-18 96.3 276 29.7
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 3.0e-18 96.3 213 36.2
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 8.6e-18 94.7 160 41.2
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 5.6e-17 92.0 214 36.0
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 8.0e-16 88.2 86 55.8
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 8.9e-15 84.7 174 38.5
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 1.3e-13 80.9 190 36.3
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.7e-13 80.5 126 44.4
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 1.4e-12 77.4 120 40.0
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 9.2e-12 74.7 167 37.1
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 3.5e-11 72.8 181 34.3
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 3.3e-09 66.2 80 45.0
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 7.3e-09 65.1 164 35.4
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 1.6e-08 63.9 78 50.0
BraA03t12266Z Brassica rapa HOM05D044247 ORTHO05D042649 6.2e-08 62.0 43 83.7
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 8.9e-07 58.2 139 32.4
C03p37660 Brassica napus HOM05D044247 ORTHO05D042649 7.5e-06 55.1 40 82.5
AagrBONN_evm.TU.Sc2ySwM_362.2843 Anthoceros agrestis HOM05D004016 ORTHO05D004732 9.9e-06 54.7 98 38.8


User provided reference genes

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