Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 8.9e-90 333.6 166 100.0
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 1.2e-81 306.6 166 92.2
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 2.9e-80 302.0 166 89.8
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 1.2e-73 280.0 166 83.7
BcaB05g23661 Brassica carinata HOM05D000358 ORTHO05D009346 1.9e-71 272.7 166 81.9
Thhalv10029025m.g Eutrema salsugineum HOM05D000358 ORTHO05D009346 1.6e-70 269.6 168 81.5
BraA09t35864Z Brassica rapa HOM05D000358 ORTHO05D009346 6.0e-70 267.7 166 80.1
BcaC04g24011 Brassica carinata HOM05D000358 ORTHO05D009346 1.7e-69 266.2 166 80.7
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 1.7e-69 266.2 166 81.3
A09p02150 Brassica napus HOM05D000358 ORTHO05D009346 8.6e-69 263.8 164 79.9
BolC9t53153H Brassica oleracea HOM05D000358 ORTHO05D009346 1.9e-68 262.7 166 80.1
BcaC03g16171 Brassica carinata HOM05D000358 ORTHO05D009346 1.2e-67 260.0 163 79.8
C02p39090 Brassica napus HOM05D000358 ORTHO05D009346 1.2e-67 260.0 163 79.8
BolC2t09919H Brassica oleracea HOM05D000358 ORTHO05D009346 1.2e-67 260.0 163 79.8
A02p24950 Brassica napus HOM05D000358 ORTHO05D009346 4.0e-66 255.0 163 78.5
BraA02t07485Z Brassica rapa HOM05D000358 ORTHO05D009346 4.0e-66 255.0 163 78.5
C09p02250 Brassica napus HOM05D000358 ORTHO05D009346 4.4e-65 251.5 190 70.5
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 2.6e-57 225.7 153 73.9
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 1.4e-50 203.4 165 63.0
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 6.4e-48 194.5 164 57.9
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 1.1e-47 193.7 165 59.4
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 5.1e-45 184.9 156 55.8
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 6.6e-45 184.5 153 59.5
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 1.1e-44 183.7 168 58.9
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 5.6e-44 181.4 164 57.3
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 5.6e-44 181.4 150 56.7
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 7.3e-44 181.0 153 57.5
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 1.3e-43 180.3 165 54.5
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 2.8e-43 179.1 172 54.7
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 4.8e-43 178.3 147 57.1
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 8.1e-43 177.6 170 54.7
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 8.1e-43 177.6 172 53.5
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 1.1e-42 177.2 147 57.1
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 1.4e-42 176.8 153 56.9
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 5.3e-42 174.9 172 55.8
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 6.9e-42 174.5 128 58.6
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 6.9e-42 174.5 166 54.8
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 6.9e-42 174.5 130 63.1
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 1.2e-41 173.7 116 68.1
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 1.2e-41 173.7 170 52.4
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 2.0e-41 172.9 172 53.5
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 2.6e-41 172.6 111 71.2
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 7.6e-41 171.0 158 53.2
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 9.9e-41 170.6 165 52.7
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 9.9e-41 170.6 167 50.9
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 1.3e-40 170.2 165 53.3
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 1.3e-40 170.2 168 51.2
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 3.8e-40 168.7 120 65.0
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 3.8e-40 168.7 120 65.0
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 3.8e-40 168.7 150 54.0
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 3.8e-40 168.7 161 52.2
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 6.4e-40 167.9 152 55.9
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 8.4e-40 167.5 131 56.5
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 8.4e-40 167.5 142 57.7
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 1.4e-39 166.8 149 55.0
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 1.9e-39 166.4 165 52.7
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 2.4e-39 166.0 117 64.1
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 4.2e-39 165.2 175 53.7
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 4.2e-39 165.2 129 61.2
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 1.2e-38 163.7 110 65.5
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 1.2e-38 163.7 110 65.5
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 1.6e-38 163.3 105 67.6
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 2.1e-38 162.9 112 67.0
TPR.G35683 Trifolium pratense HOM05D000358 ORTHO05D009346 2.7e-38 162.5 146 57.5
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 4.6e-38 161.8 143 54.5
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 6.0e-38 161.4 104 69.2
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 1.8e-37 159.8 116 62.9
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 1.8e-37 159.8 149 53.7
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 3.0e-37 159.1 115 64.3
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 3.0e-37 159.1 120 62.5
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 3.9e-37 158.7 119 63.9
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 1.9e-36 156.4 107 65.4
Medtr7g095090 Medicago truncatula HOM05D000358 ORTHO05D009346 1.9e-36 156.4 170 48.8
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 5.6e-36 154.8 150 52.7
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 5.6e-36 154.8 160 51.9
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 2.1e-35 152.9 130 58.5
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 3.7e-35 152.1 99 65.7
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 7.6e-33 144.4 133 51.1
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 1.3e-32 143.7 159 47.8
HPP92_009591 Vanilla planifolia HOM05D002842 ORTHO05D003177 1.3e-32 143.7 117 58.1
Os03g0701300 Oryza sativa ssp. japonica HOM05D000358 ORTHO05D009346 2.2e-32 142.9 100 64.0
Lalb_Chr01g0020121 Lupinus albus HOM05D000358 ORTHO05D009346 1.4e-31 140.2 98 64.3
VMungo1383G1528 Vigna mungo HOM05D000358 ORTHO05D009346 1.9e-31 139.8 169 45.6
Hma1.2p1_0822F.1_g224410 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 3.2e-31 139.0 91 65.9
Mapoly0004s0031 Marchantia polymorpha HOM05D000358 ORTHO05D009346 4.2e-31 138.7 144 46.5
Sc17g0001440 Simmondsia chinensis HOM05D000358 ORTHO05D009346 7.1e-31 137.9 106 62.3
SMO180G0003 Selaginella moellendorffii HOM05D000358 ORTHO05D009346 1.6e-30 136.7 94 60.6
PGSC0003DMG400019331 Solanum tuberosum HOM05D000358 ORTHO05D009346 3.5e-30 135.6 90 65.6
Hma1.2p1_0822F.1_g224420 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 6.0e-30 134.8 88 65.9
COL.COLO4_09074 Corchorus olitorius HOM05D000358 ORTHO05D009346 1.3e-29 133.7 144 47.9
Atru.BG.13.p Acer truncatum HOM05D000358 ORTHO05D009346 8.7e-29 131.0 103 56.3
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 2.1e-27 126.3 101 61.4
Haze_04693 Corylus avellana HOM05D000358 ORTHO05D009346 2.1e-27 126.3 105 57.1
Pp3c26_14500 Physcomitrium patens HOM05D000358 ORTHO05D009346 3.7e-27 125.6 121 43.8
Psat3g063840 Pisum sativum HOM05D000358 ORTHO05D009346 4.8e-27 125.2 144 47.9
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 2.4e-26 122.9 88 61.4
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 3.4e-25 119.0 138 46.4
AagrBONN_evm.TU.Sc2ySwM_362.2722 Anthoceros agrestis HOM05D000358 ORTHO05D009346 3.9e-21 105.5 96 51.0
Eucgr.L00778 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.6e-19 100.1 72 61.1
unitig_899.g15068 Utricularia gibba HOM05D000454 ORTHO05D000591 1.8e-18 96.7 69 62.3
Eucgr.C01960 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.0e-13 80.9 56 62.5
MELO3C014393.2 Cucumis melo HOM05D000358 ORTHO05D009346 1.5e-12 77.0 94 46.8
Ah.11g050550 Amaranthus hybridus HOM05D000358 ORTHO05D009346 2.5e-12 76.3 160 36.2
QL12p021343 Quercus lobata HOM05D000358 ORTHO05D009346 6.3e-11 71.6 104 43.3
Nn1g02275 Nelumbo nucifera HOM05D000358 ORTHO05D009346 6.9e-10 68.2 83 45.8
Oeu029468.1 Olea europaea HOM05D000358 ORTHO05D009346 7.7e-09 64.7 89 43.8
FAN20G1711 Fragaria x ananassa HOM05D000358 ORTHO05D009346 4.7e-06 55.5 167 26.3


User provided reference genes

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