Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.8e-239 830.1 427 100.0
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.1e-115 419.1 412 59.5
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.4e-107 392.1 425 56.0
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 9.2e-107 391.3 414 54.1
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.2e-106 391.0 428 54.7
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 4.6e-106 389.0 418 53.8
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.7e-105 387.1 420 53.8
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.2e-103 380.9 425 54.6
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.2e-102 375.6 445 52.1
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 2.6e-101 373.2 410 54.6
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.7e-100 369.4 427 52.7
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.2e-98 364.4 421 53.7
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.1e-98 363.6 428 52.6
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 2.7e-98 363.2 423 50.4
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 7.8e-98 361.7 411 53.5
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 1.0e-97 361.3 423 50.1
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.7e-97 360.5 441 49.0
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.3e-97 360.1 290 69.0
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.5e-96 357.5 433 52.2
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.3e-96 356.3 430 50.0
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 5.6e-96 355.5 401 53.4
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 5.6e-96 355.5 412 51.5
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 9.5e-96 354.8 409 50.6
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 2.8e-95 353.2 444 50.2
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 6.2e-95 352.1 445 50.6
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 8.1e-95 351.7 444 48.4
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 8.1e-95 351.7 401 53.1
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.2e-93 347.8 402 52.2
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 2.0e-93 347.1 412 51.0
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 4.9e-92 342.4 419 48.2
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 5.4e-91 339.0 411 51.1
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 5.6e-88 328.9 397 47.9
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 6.2e-87 325.5 470 45.5
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.4e-85 319.7 363 52.6
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 8.4e-84 315.1 426 48.4
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.4e-83 314.3 253 67.6
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 5.4e-83 312.4 412 46.8
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.7e-82 310.1 407 48.4
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 1.6e-79 300.8 381 50.4
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 3.6e-79 299.7 399 47.1
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.2e-74 284.6 445 41.6
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.6e-74 284.3 445 41.6
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 2.1e-74 283.9 452 40.9
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.1e-74 283.9 445 41.6
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 3.5e-74 283.1 418 42.8
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.0e-73 281.6 450 40.9
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.0e-73 281.6 450 40.9
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.0e-73 281.6 461 40.1
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.3e-73 281.2 450 40.7
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 3.0e-73 280.0 459 39.9
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.0e-73 280.0 459 39.9
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.9e-73 279.6 450 40.9
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 6.7e-73 278.9 438 39.5
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 8.7e-73 278.5 459 39.7
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 1.1e-72 278.1 455 40.2
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.5e-72 277.7 457 40.5
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.9e-72 277.3 460 39.3
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 1.9e-72 277.3 425 41.2
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 4.3e-72 276.2 431 40.1
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 9.6e-72 275.0 454 39.4
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.1e-71 273.9 459 39.4
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 2.1e-71 273.9 451 39.7
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 2.1e-71 273.9 428 40.4
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 2.8e-71 273.5 430 43.0
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 3.7e-71 273.1 451 39.2
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 4.8e-71 272.7 425 39.5
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 6.2e-71 272.3 444 39.4
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.1e-70 271.6 451 39.0
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.8e-70 270.8 425 39.8
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 4.0e-70 269.6 480 38.1
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 4.0e-70 269.6 438 38.6
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 5.3e-70 269.2 453 38.4
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.3e-70 269.2 460 39.3
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 2.6e-69 266.9 452 39.8
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 3.4e-69 266.5 450 39.3
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 4.5e-69 266.2 449 38.5
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 5.8e-69 265.8 408 39.7
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.0e-68 265.0 383 46.0
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.8e-68 263.1 405 42.7
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 3.8e-68 263.1 463 39.3
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.9e-68 262.7 418 41.4
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 4.9e-68 262.7 451 38.8
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 4.9e-68 262.7 424 38.4
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 6.4e-68 262.3 461 38.8
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 8.4e-68 261.9 428 39.5
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.1e-67 261.5 436 40.4
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.9e-67 260.8 489 37.4
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 4.2e-67 259.6 449 38.3
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 9.3e-67 258.5 449 38.1
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 9.3e-67 258.5 445 40.2
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 9.3e-67 258.5 429 38.7
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.2e-66 258.1 452 38.5
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.6e-66 257.7 394 42.4
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 1.6e-66 257.7 424 38.4
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 2.1e-66 257.3 429 37.8
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 4.6e-66 256.1 412 41.0
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 7.9e-66 255.4 438 38.4
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.8e-65 254.2 424 38.9
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.8e-65 254.2 461 37.5
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 2.3e-65 253.8 409 39.1
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 2.3e-65 253.8 409 39.1
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 2.3e-65 253.8 448 37.1
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 2.3e-65 253.8 424 38.4
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 3.9e-65 253.1 453 37.1
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 3.3e-64 250.0 429 37.3
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.3e-64 250.0 248 58.9
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.1e-62 245.0 474 35.9
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.8e-62 244.2 434 38.0
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 2.0e-61 240.7 423 36.9
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.7e-60 237.7 459 36.4
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.7e-60 237.7 459 36.4
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 4.2e-59 233.0 510 33.1
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 9.3e-59 231.9 426 34.7
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 9.3e-59 231.9 400 38.5
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.2e-58 231.5 379 40.4
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 6.1e-58 229.2 438 35.8
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 1.3e-57 228.0 364 38.7
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.3e-57 228.0 459 35.3
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 1.8e-57 227.6 472 35.0
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 6.7e-57 225.7 429 38.0
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 4.3e-56 223.0 429 38.9
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.4e-51 208.0 251 48.2
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 2.1e-50 204.1 336 42.3
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.4e-49 201.4 412 36.7
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 2.8e-47 193.7 168 64.3
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 6.3e-47 192.6 385 35.6
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.4e-46 191.4 485 32.4
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.3e-44 184.9 339 37.8
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.9e-44 183.7 128 72.7
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.5e-37 161.4 291 37.1
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.3e-36 158.3 168 53.6
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 3.8e-36 156.8 153 57.5
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.1e-34 151.0 199 48.2
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 2.1e-34 151.0 244 38.1
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.6e-34 150.2 310 35.8
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 1.5e-32 144.8 134 63.4
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 6.3e-31 139.4 420 27.9
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.0e-29 134.4 339 34.5
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.5e-28 129.4 145 53.1
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 3.2e-27 127.1 375 27.2
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.3e-25 120.9 285 34.4
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 7.5e-24 115.9 383 26.6
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 5.4e-22 109.8 386 28.2
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 7.0e-22 109.4 167 43.7
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.2e-20 104.4 141 42.6
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 3.8e-20 103.6 263 30.0
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 5.0e-20 103.2 377 28.1
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 5.0e-20 103.2 131 45.0
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 1.5e-19 101.7 124 45.2
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 2.7e-18 97.4 167 33.5
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 6.1e-18 96.3 178 40.4
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 1.0e-17 95.5 278 26.6
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 5.2e-17 93.2 142 35.9
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 3.4e-16 90.5 269 28.3
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 2.2e-15 87.8 284 26.8
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 2.4e-14 84.3 103 39.8
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 4.1e-14 83.6 85 55.3
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.0e-12 79.0 111 45.9
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 6.6e-12 76.3 146 32.9
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 8.6e-12 75.9 81 48.1
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.2e-09 66.6 112 42.0
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 2.0e-08 64.7 89 40.4
CARHR251120 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.4e-08 63.5 59 55.9
C06p11990 Brassica napus HOM05D003798 ORTHO05D004652 7.5e-08 62.8 90 43.3
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 1.7e-07 61.6 75 50.7
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.7e-07 61.6 79 41.8
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.9e-07 60.8 84 46.4
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 3.7e-07 60.5 58 48.3
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.8e-06 58.2 59 49.2


User provided reference genes

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