Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.8e-291 1004.2 536 100.0
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.4e-173 611.7 420 77.9
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 6.9e-168 594.7 419 75.7
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.6e-106 390.2 417 54.7
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 7.3e-101 372.1 413 52.5
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 4.0e-99 366.3 424 51.9
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 2.6e-98 363.6 424 51.9
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.5e-98 362.1 420 52.6
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.7e-97 359.8 413 50.8
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.1e-96 358.2 435 50.1
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 2.4e-96 357.1 424 52.1
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.6e-95 352.8 421 51.1
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.6e-95 352.8 386 54.9
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 6.2e-92 342.4 409 51.8
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 2.3e-91 340.5 451 48.1
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.3e-91 340.5 413 49.2
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.1e-91 340.1 413 49.2
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.2e-90 338.2 424 50.0
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 3.4e-90 336.7 417 50.4
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 9.8e-90 335.1 412 50.0
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 3.5e-87 326.6 410 48.8
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.3e-86 323.9 415 49.9
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 4.3e-85 319.7 379 50.7
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.6e-84 316.6 407 48.4
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 4.4e-82 309.7 399 48.1
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 9.9e-82 308.5 413 46.0
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-81 307.8 415 48.0
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.7e-81 307.8 403 49.1
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.2e-81 307.4 420 46.9
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 4.9e-81 306.2 415 47.7
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.4e-81 305.8 416 47.1
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-80 304.7 413 45.8
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 3.2e-80 303.5 419 46.8
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.1e-79 300.8 364 50.5
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 2.7e-79 300.4 413 45.0
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 3.3e-77 293.5 412 45.6
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 7.3e-77 292.4 447 44.5
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.8e-76 290.4 398 46.7
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 3.2e-72 276.9 393 44.0
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 4.7e-68 263.1 352 47.4
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 3.1e-59 233.8 449 38.1
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 2.0e-58 231.1 436 37.2
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 8.4e-57 225.7 426 36.2
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 8.4e-57 225.7 455 35.6
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 1.1e-56 225.3 396 38.4
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.4e-56 224.9 417 37.4
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.4e-56 224.2 395 37.7
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.4e-56 224.2 445 35.3
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.4e-56 224.2 395 37.7
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 4.2e-56 223.4 431 36.2
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.4e-56 223.0 458 35.2
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 5.4e-56 223.0 435 37.2
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 7.1e-56 222.6 456 35.3
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.1e-56 222.6 456 35.3
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 7.1e-56 222.6 406 36.9
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.2e-55 221.9 445 35.1
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.6e-55 221.5 401 38.2
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.6e-55 221.5 412 37.4
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.1e-55 221.1 399 36.8
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.7e-55 220.7 395 37.5
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.7e-55 220.7 445 34.8
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 3.5e-55 220.3 448 36.2
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 6.0e-55 219.5 406 36.7
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 1.0e-54 218.8 391 37.6
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.8e-54 218.0 397 37.5
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.8e-54 218.0 437 34.3
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 5.1e-54 216.5 394 37.1
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 5.1e-54 216.5 456 34.4
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 6.7e-54 216.1 435 35.4
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 8.7e-54 215.7 427 35.1
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.1e-53 215.3 419 36.5
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.5e-53 214.9 435 35.6
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.9e-53 214.5 391 37.3
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.9e-53 214.5 449 34.1
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 2.5e-53 214.2 397 36.8
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 4.3e-53 213.4 443 34.3
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.6e-52 211.5 407 37.3
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.6e-52 211.5 391 36.6
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 2.1e-52 211.1 456 34.9
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 2.8e-52 210.7 400 35.5
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.8e-52 210.7 397 37.0
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 6.2e-52 209.5 445 33.7
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.4e-51 208.4 395 36.2
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.4e-51 208.4 394 35.5
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 2.4e-51 207.6 411 37.0
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.4e-51 207.6 409 37.4
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.4e-51 207.6 436 35.1
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 2.4e-51 207.6 463 34.8
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 6.9e-51 206.1 395 35.4
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 6.9e-51 206.1 395 35.7
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.0e-50 204.5 376 37.5
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 2.0e-50 204.5 404 35.4
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 2.0e-50 204.5 404 35.4
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 2.0e-50 204.5 362 37.0
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 4.5e-50 203.4 412 35.7
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 5.8e-50 203.0 394 35.5
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 5.8e-50 203.0 379 36.1
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 7.6e-50 202.6 394 35.3
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 7.6e-50 202.6 392 35.7
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.3e-49 201.8 292 45.2
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.3e-49 201.8 377 36.1
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 1.3e-49 201.8 407 34.4
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 2.2e-49 201.1 374 34.5
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 2.2e-49 201.1 402 35.1
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 2.9e-49 200.7 411 37.0
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 8.4e-49 199.1 411 35.0
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 4.2e-48 196.8 464 32.8
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 4.2e-48 196.8 454 32.2
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 5.5e-48 196.4 393 36.4
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 9.3e-48 195.7 405 35.1
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.6e-47 194.9 431 33.4
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 2.7e-47 194.1 391 33.8
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 6.7e-46 189.5 382 34.8
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.9e-45 188.0 361 36.8
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 2.5e-45 187.6 499 30.9
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 7.4e-45 186.0 362 37.0
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.8e-43 181.4 251 47.8
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 3.1e-43 180.6 170 58.8
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.0e-43 180.3 250 44.4
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 4.5e-42 176.8 419 32.2
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.2e-41 174.5 365 36.4
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-40 172.2 165 57.0
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 9.3e-40 169.1 339 36.6
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 1.3e-38 165.2 357 34.7
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 6.7e-38 162.9 336 36.3
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-34 151.8 262 40.5
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.2e-33 147.9 450 30.9
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 5.0e-33 146.7 379 31.9
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 4.6e-31 140.2 132 59.8
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 2.5e-29 134.4 337 29.7
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 4.8e-28 130.2 306 31.7
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.1e-27 129.0 156 50.6
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 1.4e-27 128.6 153 48.4
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 2.0e-26 124.8 153 47.1
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.2e-25 121.3 205 40.5
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 1.1e-24 119.0 176 45.5
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.5e-24 117.9 266 35.7
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 7.2e-24 116.3 203 36.9
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 2.1e-23 114.8 361 28.5
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 4.7e-23 113.6 329 33.7
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 8.8e-22 109.4 372 26.1
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.1e-21 109.0 242 32.6
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.6e-21 107.8 256 32.8
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 5.3e-19 100.1 159 44.0
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 1.2e-18 99.0 132 43.9
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-17 95.5 111 48.6
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.8e-17 94.0 137 39.4
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 9.4e-16 89.4 285 29.1
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.4e-14 85.5 75 65.3
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 3.9e-14 84.0 118 40.7
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 3.9e-14 84.0 142 38.7
AL6G50230 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.0e-13 81.6 39 100.0
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.4e-13 79.7 116 44.8
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 7.4e-13 79.7 141 33.3
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 7.4e-13 79.7 157 31.2
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 9.7e-13 79.3 303 27.4
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 3.7e-12 77.4 128 38.3
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 2.4e-11 74.7 111 32.4
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 8.5e-09 66.2 129 36.4
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.2e-08 64.3 106 39.6
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.6e-07 62.0 58 53.4
CARHR251120 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.1e-07 61.6 65 55.4
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 6.1e-07 60.1 66 45.5
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 1.0e-06 59.3 59 47.5
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 5.2e-06 57.0 88 38.6


User provided reference genes

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