Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.7e-256 888.3 481 100.0
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.7e-221 771.5 482 87.6
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 3.5e-219 765.0 482 86.3
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.0e-167 592.0 450 71.3
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-160 570.5 450 70.0
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 6.2e-160 568.2 450 69.6
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.6e-158 562.8 448 68.5
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 1.2e-142 510.8 445 63.8
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 6.4e-141 505.0 454 63.0
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 3.5e-139 499.2 454 62.8
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 3.5e-139 499.2 434 63.4
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 3.0e-138 496.1 453 62.7
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 6.7e-138 495.0 461 62.0
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 2.5e-137 493.0 434 63.1
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.8e-127 460.3 498 56.2
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-126 457.6 446 59.6
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 1.6e-120 437.2 620 46.3
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.1e-119 434.5 279 79.2
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.7e-115 419.9 450 54.9
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 5.1e-114 415.6 443 55.1
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 8.8e-114 414.8 443 54.2
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 8.8e-114 414.8 419 57.0
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.5e-113 413.3 459 53.4
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-112 411.0 440 55.2
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 5.9e-110 402.1 444 53.6
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.4e-108 397.5 439 53.8
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 9.4e-108 394.8 470 51.1
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 3.6e-107 392.9 440 53.4
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.9e-106 389.4 416 54.6
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.8e-106 388.3 420 53.8
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.8e-103 380.6 444 52.7
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.8e-101 372.9 419 52.0
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 1.9e-100 370.5 424 51.7
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.7e-99 366.7 377 56.5
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.3e-97 359.8 433 50.3
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.3e-96 357.8 430 50.5
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.8e-96 355.9 413 50.8
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 1.0e-90 338.2 429 49.2
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 1.2e-89 334.7 426 48.8
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.6e-78 297.7 428 43.7
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 1.6e-78 297.7 429 42.7
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 2.0e-78 297.4 426 44.4
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.7e-78 297.0 428 43.7
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.9e-78 295.8 428 43.7
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 1.3e-77 294.7 453 43.5
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 6.6e-77 292.4 444 43.0
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 6.6e-77 292.4 454 42.3
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.1e-76 291.6 444 41.7
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.5e-76 291.2 443 43.6
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.9e-76 290.8 443 42.9
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 4.2e-76 289.7 445 42.5
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 9.5e-76 288.5 424 42.9
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 1.6e-75 287.7 466 41.6
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.6e-75 287.7 466 41.6
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 2.8e-75 287.0 450 41.6
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 2.8e-75 287.0 444 41.4
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 4.7e-75 286.2 456 41.7
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 6.1e-75 285.8 466 41.4
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 6.1e-75 285.8 451 42.1
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 8.0e-75 285.4 422 42.4
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.8e-74 284.3 458 41.7
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 3.0e-74 283.5 434 41.0
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.2e-74 282.7 458 41.7
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 5.2e-74 282.7 458 41.7
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.5e-73 281.2 446 41.7
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.6e-73 280.4 466 41.0
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.4e-73 279.6 427 43.6
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 4.4e-73 279.6 422 43.4
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 7.5e-73 278.9 431 41.8
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 1.3e-72 278.1 443 42.0
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.3e-72 278.1 465 39.1
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.7e-72 277.7 443 42.2
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 2.2e-72 277.3 431 41.5
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 2.9e-72 276.9 449 40.3
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 3.7e-72 276.6 408 41.9
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 4.9e-72 276.2 449 40.3
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 6.4e-72 275.8 449 41.9
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 8.3e-72 275.4 423 41.6
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.1e-71 275.0 431 41.1
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.1e-71 275.0 440 40.5
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.4e-71 274.6 449 39.9
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 1.8e-71 274.2 450 41.3
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 4.1e-71 273.1 433 41.1
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 4.1e-71 273.1 426 42.3
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.4e-71 272.7 372 46.2
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 9.2e-71 271.9 467 40.5
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.5e-70 270.0 436 41.3
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 2.3e-69 267.3 457 38.3
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 5.0e-69 266.2 465 39.4
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 8.6e-69 265.4 486 37.2
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.5e-68 264.6 430 40.2
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.9e-68 264.2 485 37.3
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 3.3e-68 263.5 426 41.1
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 4.3e-68 263.1 420 40.5
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 2.8e-67 260.4 475 37.5
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 3.6e-67 260.0 416 41.3
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 3.6e-67 260.0 464 37.5
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.0e-66 258.5 434 38.0
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.8e-66 257.7 476 39.5
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 3.1e-66 256.9 426 39.9
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 5.2e-66 256.1 444 38.1
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 5.2e-66 256.1 439 39.9
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.5e-65 254.6 430 39.5
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 4.9e-64 249.6 463 39.5
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.4e-63 248.1 398 39.9
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 1.4e-63 248.1 421 38.0
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.4e-63 248.1 454 38.8
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 4.1e-63 246.5 449 39.2
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 4.1e-63 246.5 419 38.2
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 5.4e-63 246.1 446 37.2
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 7.0e-63 245.7 400 41.8
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.6e-62 244.6 427 38.4
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 6.0e-62 242.7 425 40.9
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 2.3e-61 240.7 449 38.1
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 3.0e-61 240.4 500 36.4
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.0e-61 239.6 295 49.8
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 4.7e-59 233.0 418 39.0
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.8e-58 231.1 391 39.1
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 7.1e-55 219.2 362 40.3
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.6e-54 218.0 243 54.3
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 3.3e-52 210.3 349 42.4
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 4.3e-52 209.9 178 64.0
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.1e-50 203.8 344 39.8
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 6.8e-50 202.6 419 34.8
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.2e-49 201.8 448 36.6
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 4.9e-48 196.4 419 35.6
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 6.4e-48 196.1 147 67.3
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.4e-47 194.1 481 33.7
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 4.6e-46 189.9 415 35.9
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.6e-46 189.9 155 65.8
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 4.0e-42 176.8 161 59.0
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.8e-42 176.0 261 43.7
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 6.8e-42 176.0 131 68.7
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 3.0e-37 160.6 158 59.5
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 3.3e-36 157.1 252 39.7
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.8e-35 154.1 292 36.3
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 1.1e-34 152.1 316 34.8
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.1e-34 150.6 169 50.9
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 1.0e-29 135.6 127 59.1
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 3.0e-29 134.0 317 36.9
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 6.6e-29 132.9 265 37.7
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 3.3e-28 130.6 231 38.1
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.6e-28 129.8 114 58.8
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 2.4e-26 124.4 379 30.3
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 6.4e-24 116.3 169 45.6
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.2e-23 114.0 118 53.4
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 9.3e-23 112.5 204 38.2
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 7.9e-22 109.4 391 26.3
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.1e-20 105.5 84 66.7
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 2.5e-20 104.4 161 44.7
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 2.1e-19 101.3 247 32.0
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.0e-16 92.4 204 39.7
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 3.8e-16 90.5 282 30.1
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 8.4e-16 89.4 123 42.3
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 2.1e-14 84.7 137 36.5
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 7.4e-12 76.3 120 41.7
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 1.3e-11 75.5 182 32.4
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 2.4e-10 71.2 108 40.7
CARHR251120 Cardamine hirsuta HOM05D003798 ORTHO05D004652 5.3e-10 70.1 73 53.4
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 5.3e-10 70.1 96 38.5
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 4.5e-09 67.0 58 56.9
Aa31sc472G20 Aethionema arabicum HOM05D003798 ORTHO05D058687 1.7e-08 65.1 129 35.7
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.2e-08 64.7 72 50.0
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 2.2e-08 64.7 77 50.6
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.5e-07 61.2 107 37.4
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 2.5e-07 61.2 75 45.3
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.3e-07 59.3 89 44.9


User provided reference genes

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