Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.0e-267 925.2 474 100.0
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.8e-236 820.5 474 89.7
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 2.0e-211 739.2 471 82.8
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.2e-185 651.7 459 75.2
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.9e-176 620.9 457 72.6
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 8.2e-165 584.3 373 82.6
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 3.2e-161 572.4 441 69.4
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 9.4e-161 570.9 439 69.7
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 5.3e-156 555.1 439 68.6
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 7.0e-156 554.7 443 69.5
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 7.7e-155 551.2 467 65.3
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 6.3e-149 531.6 443 66.6
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 8.3e-117 424.9 421 55.6
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 3.5e-115 419.5 457 54.3
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.5e-113 413.3 440 55.2
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.3e-109 401.0 409 56.5
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-107 394.0 424 54.5
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 2.7e-107 393.3 427 53.4
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.5e-107 392.9 422 54.7
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.9e-105 387.1 442 52.0
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.9e-105 387.1 428 55.1
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 3.3e-105 386.3 434 52.3
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 4.3e-105 386.0 424 54.0
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.7e-104 382.5 412 54.6
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 6.2e-104 382.1 467 51.0
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.8e-102 375.6 427 52.7
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 8.4e-101 371.7 422 52.4
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-99 367.9 423 52.2
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 2.1e-99 367.1 422 51.9
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 1.9e-97 360.5 434 51.6
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.3e-97 358.6 420 52.6
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 9.6e-97 358.2 471 48.6
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 9.6e-97 358.2 419 52.7
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 6.4e-93 345.5 595 39.3
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-92 344.7 417 50.6
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 6.0e-91 339.0 438 50.0
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.0e-90 336.7 435 48.7
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 1.3e-85 321.2 404 50.7
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.1e-79 301.6 431 45.5
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 1.7e-77 294.3 438 43.2
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 3.0e-74 283.5 440 43.0
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 2.2e-72 277.3 441 42.4
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.2e-72 277.3 510 40.4
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.2e-72 277.3 502 40.6
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.2e-72 277.3 502 40.6
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 2.2e-72 277.3 441 42.0
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 4.8e-72 276.2 472 40.7
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 4.8e-72 276.2 463 40.6
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 8.2e-72 275.4 447 41.2
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 8.2e-72 275.4 485 40.4
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.4e-71 274.6 445 42.0
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 3.1e-71 273.5 493 40.8
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 4.1e-71 273.1 439 42.1
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 5.3e-71 272.7 441 42.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 1.5e-70 271.2 472 40.0
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.5e-70 271.2 472 40.0
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.0e-70 270.8 502 39.4
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 2.0e-70 270.8 448 39.7
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 3.4e-70 270.0 492 38.8
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 4.5e-70 269.6 502 39.2
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.9e-70 269.2 472 39.8
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 7.6e-70 268.9 474 41.6
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.3e-69 268.1 470 39.6
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.3e-69 268.1 464 39.2
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.7e-69 267.7 502 39.0
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 2.2e-69 267.3 430 42.3
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 2.9e-69 266.9 479 39.9
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 3.8e-69 266.5 458 39.5
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.0e-69 266.2 402 44.8
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 5.0e-69 266.2 436 40.6
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 6.5e-69 265.8 472 39.6
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 8.5e-69 265.4 427 40.5
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 8.5e-69 265.4 427 40.5
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.1e-68 265.0 475 38.5
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 1.1e-68 265.0 466 38.8
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.1e-68 265.0 472 39.6
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.1e-68 265.0 509 38.1
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 2.5e-68 263.8 506 38.1
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.6e-67 261.2 473 39.5
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.6e-67 261.2 459 39.0
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 1.6e-67 261.2 485 38.8
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 2.7e-67 260.4 452 38.5
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.7e-67 260.4 468 38.9
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 3.6e-67 260.0 500 37.6
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 1.4e-66 258.1 452 38.3
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 1.8e-66 257.7 468 38.2
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 3.9e-66 256.5 466 38.4
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 8.8e-66 255.4 438 39.7
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.1e-65 255.0 468 38.2
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.5e-65 253.8 482 39.2
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 2.5e-65 253.8 452 39.2
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.5e-65 253.8 446 39.0
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 4.3e-65 253.1 525 38.1
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 4.3e-65 253.1 473 38.3
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 5.7e-65 252.7 489 38.2
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 9.7e-65 251.9 465 37.8
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.7e-64 251.1 469 38.4
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 3.7e-64 250.0 497 37.6
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 6.3e-64 249.2 460 38.7
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 1.8e-63 247.7 476 38.0
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 2.4e-63 247.3 469 38.0
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 4.1e-63 246.5 408 41.9
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 6.9e-63 245.7 520 36.7
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.2e-62 245.0 478 38.3
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.5e-62 244.6 461 38.4
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 1.9e-60 237.7 452 38.3
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 4.2e-60 236.5 497 35.8
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.2e-60 236.5 253 51.8
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 4.2e-60 236.5 525 34.9
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.2e-59 235.0 466 35.8
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 7.9e-59 232.3 435 36.6
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 7.9e-59 232.3 445 37.1
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 2.0e-57 227.6 438 36.8
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 6.3e-56 222.6 472 37.3
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.4e-55 221.5 485 36.9
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 4.1e-55 219.9 394 38.3
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 8.5e-53 212.2 454 36.1
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.4e-52 211.5 297 46.8
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.5e-52 210.7 428 37.1
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 8.0e-51 205.7 381 38.8
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.4e-50 204.9 258 49.6
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 6.7e-50 202.6 338 41.4
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.4e-47 194.9 418 36.1
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 4.5e-46 189.9 347 37.8
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.5e-44 184.9 476 33.8
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.5e-44 184.9 510 32.4
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 9.4e-44 182.2 467 33.6
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.6e-43 181.4 262 45.0
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.1e-39 168.7 146 58.2
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 2.4e-39 167.5 150 58.7
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 5.0e-37 159.8 185 51.9
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.2e-36 156.8 317 36.3
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 4.7e-35 153.3 346 33.2
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 4.0e-34 150.2 262 38.5
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.5e-33 148.3 185 50.8
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.5e-30 137.1 289 36.0
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.7e-30 136.0 113 60.2
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.3e-29 134.4 329 34.7
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.2e-27 128.6 241 36.9
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 4.7e-27 126.7 444 27.9
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 6.1e-27 126.3 392 27.3
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 8.0e-27 125.9 204 43.6
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 2.3e-26 124.4 152 51.3
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.0e-25 121.3 206 41.7
CARHR251120 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.9e-24 116.7 86 77.9
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 7.0e-23 112.8 191 38.2
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 1.6e-22 111.7 193 41.5
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 3.8e-21 107.1 127 48.0
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 6.1e-19 99.8 160 40.6
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 8.0e-19 99.4 231 31.6
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 8.9e-18 95.9 136 40.4
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.3e-16 92.0 164 37.2
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.3e-16 92.0 463 25.9
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 8.3e-16 89.4 143 39.2
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.6e-14 85.1 67 65.7
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 2.0e-14 84.7 328 29.0
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 3.5e-14 84.0 349 26.6
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 3.9e-13 80.5 177 32.8
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 8.0e-11 72.8 106 37.7
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.8e-10 71.6 58 60.3
C06p11990 Brassica napus HOM05D003798 ORTHO05D004652 4.0e-10 70.5 97 43.3
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 9.8e-09 65.9 75 48.0
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.4e-07 62.0 120 37.5
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.4e-07 61.2 123 37.4
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 2.4e-07 61.2 61 54.1
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 3.2e-07 60.8 324 26.2
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 3.2e-07 60.8 62 51.6
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 1.2e-06 58.9 85 47.1


User provided reference genes

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