Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 4.2e-113 411.4 207 100.0
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 3.3e-110 401.7 209 97.6
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.1e-108 396.7 207 96.1
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 2.1e-104 382.5 206 93.7
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 3.5e-104 381.7 207 94.7
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 6.0e-104 380.9 207 93.7
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 7.4e-102 374.0 210 90.5
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 9.6e-102 373.6 209 91.4
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.3e-101 373.2 207 91.8
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 1.3e-101 373.2 208 91.3
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 3.7e-101 371.7 209 90.9
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 4.8e-101 371.3 208 90.9
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 6.2e-101 370.9 209 92.3
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 1.8e-100 369.4 193 95.9
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 3.1e-100 368.6 207 91.3
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 6.9e-100 367.5 207 90.3
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 1.5e-99 366.3 211 90.5
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 4.2e-97 358.2 209 89.5
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 1.3e-95 353.2 212 86.3
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 3.3e-94 348.6 210 87.6
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.0e-82 310.5 210 77.6
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.8e-82 308.5 210 77.1
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.9e-81 306.2 210 77.1
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 4.2e-81 305.1 213 75.6
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 7.2e-81 304.3 210 77.1
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 2.1e-80 302.8 209 76.6
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 2.7e-80 302.4 208 77.4
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 2.7e-80 302.4 216 74.5
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 3.6e-80 302.0 212 75.9
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 7.9e-80 300.8 213 75.1
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 7.9e-80 300.8 213 75.1
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.0e-79 300.4 217 73.7
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 1.4e-79 300.1 162 90.1
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 1.8e-79 299.7 218 72.9
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.8e-79 299.7 203 76.8
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.8e-79 299.7 213 74.6
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 2.3e-79 299.3 208 76.0
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.0e-79 298.9 210 75.2
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 3.0e-79 298.9 212 74.5
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 3.9e-79 298.5 209 75.1
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 8.8e-79 297.4 217 74.7
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-78 297.0 210 75.2
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 1.5e-78 296.6 217 75.6
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 1.5e-78 296.6 207 73.9
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.5e-78 296.6 175 83.4
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 1.5e-78 296.6 210 74.8
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.5e-78 296.6 211 76.3
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.5e-78 296.6 207 74.4
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 2.0e-78 296.2 210 74.8
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.6e-78 295.8 218 74.3
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 2.6e-78 295.8 176 84.7
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 3.3e-78 295.4 219 72.6
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 4.4e-78 295.0 216 73.1
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 4.4e-78 295.0 211 75.8
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 4.4e-78 295.0 175 82.3
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 5.7e-78 294.7 178 82.0
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 7.4e-78 294.3 207 75.4
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 7.4e-78 294.3 214 73.4
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.3e-77 293.5 207 73.9
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 1.3e-77 293.5 214 74.8
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 1.7e-77 293.1 176 81.8
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.7e-77 293.1 209 74.2
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 2.2e-77 292.7 207 75.8
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 2.2e-77 292.7 160 90.6
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 2.8e-77 292.4 214 73.4
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 3.7e-77 292.0 213 73.2
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.7e-77 292.0 167 85.6
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 3.7e-77 292.0 214 73.8
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 6.3e-77 291.2 210 73.3
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 6.3e-77 291.2 209 74.2
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 6.3e-77 291.2 210 72.9
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 8.2e-77 290.8 208 74.5
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 8.2e-77 290.8 207 72.5
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 1.1e-76 290.4 174 80.5
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 1.1e-76 290.4 210 72.9
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-76 290.4 210 72.9
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.1e-76 290.4 209 74.6
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.1e-76 290.4 207 73.4
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.4e-76 290.0 211 74.9
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 1.4e-76 290.0 208 74.0
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 1.4e-76 290.0 209 75.1
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.8e-76 289.7 178 82.0
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.8e-76 289.7 181 79.0
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.8e-76 289.7 213 72.3
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 1.8e-76 289.7 176 81.2
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 1.8e-76 289.7 205 73.7
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 3.1e-76 288.9 209 72.2
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 3.1e-76 288.9 212 73.1
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.1e-76 288.9 210 72.4
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.1e-76 288.9 210 72.4
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 3.1e-76 288.9 163 87.7
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 4.1e-76 288.5 212 71.7
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 4.1e-76 288.5 214 72.4
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 6.9e-76 287.7 210 73.3
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 6.9e-76 287.7 209 74.6
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 9.1e-76 287.3 213 71.4
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.5e-75 286.6 176 80.1
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 2.0e-75 286.2 210 73.3
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 2.0e-75 286.2 209 71.8
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.6e-75 285.8 210 71.9
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.4e-75 285.4 207 73.9
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 4.5e-75 285.0 211 72.5
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 5.9e-75 284.6 212 72.2
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 5.9e-75 284.6 210 74.3
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 7.7e-75 284.3 145 93.1
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 7.7e-75 284.3 208 73.1
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 1.0e-74 283.9 209 72.2
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 1.0e-74 283.9 218 71.1
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 1.3e-74 283.5 210 70.5
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 1.3e-74 283.5 214 71.0
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.2e-74 282.7 215 71.2
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 2.9e-74 282.3 211 70.6
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 6.5e-74 281.2 214 72.0
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 8.5e-74 280.8 212 72.6
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 1.4e-73 280.0 213 69.5
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 1.9e-73 279.6 209 69.4
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.7e-72 275.8 203 73.4
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 3.6e-72 275.4 206 71.4
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 6.1e-72 274.6 166 81.9
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.0e-71 273.9 202 72.8
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.0e-71 273.9 202 72.8
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.4e-71 273.5 203 72.4
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 4.4e-70 268.5 199 70.9
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 7.4e-70 267.7 202 67.8
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 9.7e-70 267.3 146 84.2
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.7e-69 266.5 207 70.0
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.7e-69 266.5 207 70.0
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 3.1e-68 262.3 201 65.7
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.1e-68 262.3 159 81.1
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 4.1e-68 261.9 194 71.6
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.6e-67 260.0 159 79.2
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.6e-67 260.0 159 79.2
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 5.9e-67 258.1 188 72.9
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 7.7e-67 257.7 207 69.6
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.7e-67 257.7 157 80.3
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 7.7e-67 257.7 155 82.6
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 3.8e-66 255.4 157 79.6
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 1.6e-64 250.0 210 64.8
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.4e-63 246.9 183 71.0
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 3.0e-63 245.7 211 67.3
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 2.8e-61 239.2 176 71.0
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 1.9e-57 226.5 176 68.8
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 2.5e-57 226.1 142 76.1
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.6e-56 223.4 175 66.3
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 6.8e-55 218.0 149 71.1
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 1.2e-54 217.2 214 57.5
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 5.7e-46 188.3 213 55.9
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 7.5e-46 188.0 211 53.6
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.5e-41 173.7 92 88.0
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.9e-36 156.8 181 52.5
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 5.2e-31 138.7 74 87.8
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 8.9e-15 84.7 105 49.5
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 4.4e-14 82.4 105 49.5
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 2.2e-13 80.1 105 48.6
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 3.5e-11 72.8 103 45.6


User provided reference genes

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