Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 3.9e-219 764.6 417 100.0
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.1e-200 703.4 420 88.6
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.4e-187 659.8 421 82.7
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 5.3e-184 647.9 421 80.5
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 7.2e-181 637.5 419 81.1
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.2e-180 636.7 423 80.9
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 6.5e-174 614.4 423 77.3
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 6.5e-174 614.4 423 77.3
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 1.5e-170 603.2 423 76.8
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.0e-166 590.5 423 75.9
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 2.8e-156 555.8 422 71.8
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 5.6e-141 505.0 428 65.2
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 4.9e-113 412.1 427 56.9
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 5.3e-107 392.1 428 55.1
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 2.5e-101 373.2 420 54.3
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.5e-96 356.7 417 54.7
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.8e-94 350.5 421 51.1
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 3.3e-93 346.3 418 52.2
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 4.6e-87 325.9 417 49.2
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 4.4e-77 292.7 429 41.7
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 9.7e-77 291.6 427 41.9
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 9.7e-77 291.6 428 42.1
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 9.7e-77 291.6 431 41.8
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 4.8e-76 289.3 427 40.5
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 1.8e-75 287.3 437 40.0
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 4.1e-75 286.2 425 40.0
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 6.9e-75 285.4 423 42.3
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 2.9e-73 280.0 430 40.7
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 3.8e-73 279.6 426 40.4
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 8.5e-73 278.5 431 39.9
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.9e-72 277.3 428 40.0
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 9.4e-72 275.0 419 45.6
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 2.7e-71 273.5 438 40.9
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 6.1e-71 272.3 155 87.7
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 7.9e-71 271.9 436 39.2
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.8e-70 270.8 430 39.5
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 6.7e-70 268.9 425 40.7
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 1.1e-69 268.1 433 37.6
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.3e-68 264.6 428 37.9
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 3.7e-68 263.1 427 40.7
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 3.1e-67 260.0 447 37.4
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 3.5e-66 256.5 424 39.9
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 8.5e-65 251.9 428 38.3
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.5e-64 250.4 437 37.1
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.2e-64 250.0 428 38.1
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 4.2e-64 249.6 443 37.9
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 7.2e-64 248.8 430 39.3
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.0e-62 245.0 426 38.5
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 2.3e-62 243.8 424 38.4
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 6.7e-62 242.3 402 40.3
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 8.8e-62 241.9 424 38.9
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.5e-61 241.1 424 38.9
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 2.0e-61 240.7 424 38.9
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 5.7e-61 239.2 450 37.1
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 7.5e-61 238.8 428 38.6
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.3e-60 238.0 435 36.3
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.7e-60 237.7 424 38.4
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.8e-59 234.2 353 38.8
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.8e-59 234.2 428 39.3
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 4.1e-59 233.0 427 41.0
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 5.3e-59 232.6 439 36.0
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.0e-58 230.7 424 38.0
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 5.9e-58 229.2 435 34.9
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.3e-57 228.0 423 38.3
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.3e-57 228.0 425 37.9
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.3e-57 228.0 435 34.7
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 1.3e-57 228.0 427 35.4
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 2.2e-57 227.3 423 38.1
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 2.9e-57 226.9 366 40.4
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 3.8e-57 226.5 399 38.3
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.5e-56 223.8 394 36.5
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 5.5e-56 222.6 155 76.1
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 9.4e-56 221.9 425 34.6
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 1.6e-55 221.1 155 75.5
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 1.6e-55 221.1 155 75.5
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 2.7e-55 220.3 448 35.5
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 4.7e-55 219.5 451 34.6
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 8.0e-55 218.8 352 39.5
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.4e-54 218.0 155 75.5
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.8e-54 217.6 421 37.1
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 4.0e-54 216.5 429 35.0
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 6.8e-54 215.7 424 34.0
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 1.5e-53 214.5 442 34.2
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 2.0e-53 214.2 424 34.0
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 9.8e-53 211.8 419 40.1
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.7e-52 211.1 423 34.5
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 1.7e-52 211.1 440 34.3
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 3.7e-52 209.9 422 35.5
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 4.8e-52 209.5 446 34.1
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 6.3e-52 209.1 440 34.3
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 8.3e-52 208.8 420 34.8
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.1e-51 208.4 336 38.1
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.1e-51 208.4 444 34.0
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.4e-51 208.0 424 35.6
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 1.4e-51 208.0 435 34.3
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.4e-51 207.2 369 37.7
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 3.1e-51 206.8 447 32.7
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 3.1e-51 206.8 440 34.1
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 5.4e-51 206.1 401 33.9
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 7.0e-51 205.7 427 34.4
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.2e-50 204.9 433 36.5
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 5.9e-50 202.6 438 34.0
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 7.7e-50 202.2 144 75.0
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.0e-49 201.8 422 34.8
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 2.3e-49 200.7 427 33.0
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 2.9e-49 200.3 427 33.5
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 5.0e-49 199.5 396 34.6
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.5e-48 198.0 427 34.4
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 3.2e-48 196.8 423 33.1
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 5.5e-48 196.1 426 32.6
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.2e-47 194.9 425 34.4
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.2e-47 194.9 425 34.4
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 1.2e-47 194.9 428 32.0
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 4.0e-46 189.9 427 33.3
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 6.8e-46 189.1 421 33.0
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 1.2e-45 188.3 354 35.6
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.5e-45 188.0 448 31.9
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 9.8e-45 185.3 358 36.3
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.7e-44 184.5 435 32.9
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 6.3e-44 182.6 424 31.4
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 1.4e-43 181.4 435 32.0
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 4.1e-43 179.9 314 36.6
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 5.0e-41 172.9 153 62.7
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-40 171.8 421 31.8
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.5e-40 171.4 419 33.2
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 5.6e-40 169.5 485 30.3
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 2.3e-38 164.1 355 33.0
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.5e-37 161.4 431 29.9
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.3e-36 158.3 268 38.4
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 1.3e-36 158.3 412 29.9
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 4.9e-36 156.4 268 38.1
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 2.7e-34 150.6 388 34.3
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 3.0e-33 147.1 134 62.7
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 3.9e-33 146.7 150 50.7
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 8.9e-30 135.6 338 31.4
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 3.6e-23 113.6 414 27.3
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 4.7e-23 113.2 413 27.1
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 4.9e-20 103.2 261 31.8
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 9.2e-19 99.0 404 25.5
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 4.6e-18 96.7 70 62.9
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 4.6e-18 96.7 70 62.9
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.7e-17 94.7 83 56.6
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.3e-17 94.4 217 31.3
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 3.9e-17 93.6 67 65.7
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 3.9e-17 93.6 67 65.7
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 3.9e-17 93.6 67 65.7
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 8.6e-17 92.4 62 67.7
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 4.3e-16 90.1 418 25.4
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 3.6e-15 87.0 72 59.7
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 6.2e-15 86.3 66 60.6
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 4.4e-13 80.1 54 68.5
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 4.9e-12 76.6 459 22.7
C05p54450 Brassica napus HOM05D021248 ORTHO05D018618 3.2e-11 73.9 60 65.0
C01p45260 Brassica napus HOM05D021248 ORTHO05D018618 7.1e-11 72.8 52 67.3
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 9.2e-11 72.4 225 27.1
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 1.6e-10 71.6 83 49.4
BolC5t34111H Brassica oleracea HOM05D004053 ORTHO05D018618 3.5e-10 70.5 46 71.7
BolC5t28964H Brassica oleracea HOM05D004053 ORTHO05D005065 6.0e-10 69.7 107 40.2
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.3e-09 67.8 127 33.9
A04p06740 Brassica napus HOM05D004053 ORTHO05D033555 3.0e-09 67.4 39 76.9
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 1.1e-08 65.5 263 27.4
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.6e-07 61.6 56 57.1


User provided reference genes

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