Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 4.0e-113 411.4 199 100.0
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 1.2e-109 399.8 199 96.5
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 3.1e-105 385.2 199 91.5
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 5.8e-104 380.9 199 91.0
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 5.8e-104 380.9 199 91.0
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 9.9e-104 380.2 199 92.0
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 6.4e-103 377.5 199 89.4
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 8.7e-100 367.1 200 88.0
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 4.3e-99 364.8 200 87.5
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 5.6e-99 364.4 199 85.9
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 9.6e-99 363.6 199 84.9
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 1.6e-98 362.8 199 85.9
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 2.1e-98 362.5 199 85.4
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 1.1e-97 360.1 199 85.4
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 1.8e-97 359.4 199 84.9
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 1.3e-95 353.2 200 84.0
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 3.4e-88 328.6 160 93.8
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 5.8e-88 327.8 199 80.9
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 5.3e-81 304.7 193 76.2
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 5.5e-78 294.7 183 74.9
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 1.8e-76 289.7 191 70.7
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 5.1e-76 288.1 190 72.1
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 5.1e-76 288.1 191 70.2
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 1.1e-75 287.0 179 73.2
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 1.1e-75 287.0 188 71.3
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 4.3e-75 285.0 173 78.0
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 5.7e-75 284.6 192 70.3
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 6.3e-74 281.2 180 74.4
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 1.1e-73 280.4 184 72.8
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 1.8e-73 279.6 187 70.1
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 3.1e-73 278.9 180 71.1
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 3.1e-73 278.9 213 63.8
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 3.1e-73 278.9 192 68.8
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 3.1e-73 278.9 189 69.3
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 3.1e-73 278.9 186 71.0
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 5.3e-73 278.1 182 72.0
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 5.3e-73 278.1 185 71.4
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 6.9e-73 277.7 186 72.6
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 6.9e-73 277.7 191 69.1
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 9.0e-73 277.3 179 70.4
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 1.2e-72 276.9 188 68.6
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 1.2e-72 276.9 197 69.5
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 1.5e-72 276.6 168 75.0
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 1.5e-72 276.6 187 68.4
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 2.0e-72 276.2 161 78.9
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 2.6e-72 275.8 185 71.4
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 2.6e-72 275.8 188 69.1
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 3.4e-72 275.4 175 73.1
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 3.4e-72 275.4 186 71.0
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 5.9e-72 274.6 182 72.5
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 2.9e-71 272.3 160 76.9
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 6.5e-71 271.2 187 67.9
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 8.5e-71 270.8 189 68.3
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 1.1e-70 270.4 193 66.8
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.1e-70 270.4 185 68.6
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 1.4e-70 270.0 184 70.7
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 1.4e-70 270.0 193 69.4
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.4e-70 270.0 193 67.9
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 1.4e-70 270.0 185 70.8
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 1.4e-70 270.0 190 67.9
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 1.9e-70 269.6 191 70.2
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 1.9e-70 269.6 190 68.4
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 3.2e-70 268.9 180 69.4
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 4.2e-70 268.5 186 67.7
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 4.2e-70 268.5 186 67.7
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 4.2e-70 268.5 161 75.2
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 5.5e-70 268.1 191 68.1
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 1.2e-69 266.9 161 75.8
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 2.1e-69 266.2 183 66.1
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 2.7e-69 265.8 165 74.5
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 2.7e-69 265.8 189 68.8
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 3.6e-69 265.4 165 73.9
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 4.6e-69 265.0 163 73.0
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 6.1e-69 264.6 162 74.7
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 1.8e-68 263.1 189 66.1
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.8e-68 263.1 189 64.6
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 3.9e-68 261.9 163 73.0
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 5.1e-68 261.5 189 64.6
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 6.7e-68 261.2 185 65.4
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 6.7e-68 261.2 176 71.0
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 6.7e-68 261.2 176 68.2
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 8.7e-68 260.8 197 60.9
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 2.5e-67 259.2 184 67.9
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 3.3e-67 258.8 193 63.7
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 5.7e-67 258.1 182 67.6
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 9.7e-67 257.3 170 68.8
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.3e-66 256.9 189 64.0
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 6.3e-66 254.6 179 68.2
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 6.3e-66 254.6 184 66.3
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 1.1e-65 253.8 164 73.2
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 6.5e-63 244.6 228 53.5
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 3.2e-62 242.3 187 62.6
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 1.8e-60 236.5 193 58.0
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 1.8e-60 236.5 189 58.7
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 8.8e-60 234.2 244 50.8
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 2.8e-58 229.2 165 63.0
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 3.7e-58 228.8 200 56.0
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 6.3e-58 228.0 159 66.0
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 1.2e-56 223.8 140 72.9
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.5e-56 223.4 163 62.6
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 2.0e-56 223.0 157 68.8
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 1.0e-55 220.7 157 66.9
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 1.0e-55 220.7 206 54.4
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 1.7e-55 219.9 197 55.8
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 2.9e-55 219.2 172 63.4
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 5.0e-55 218.4 151 62.3
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 2.5e-54 216.1 267 47.2
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 4.7e-53 211.8 157 65.0
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 1.8e-52 209.9 147 69.4
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 5.7e-51 204.9 189 52.4
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 5.0e-47 191.8 169 56.2
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 1.5e-46 190.3 169 53.3
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 2.5e-46 189.5 196 50.0
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 5.5e-46 188.3 121 71.9
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.6e-45 186.8 150 62.0
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.0e-44 184.1 130 66.2
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 3.7e-42 175.6 130 63.1
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 8.2e-42 174.5 121 65.3
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 9.1e-41 171.0 107 72.9
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 1.9e-38 163.3 129 61.2
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 3.2e-38 162.5 119 66.4
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 2.1e-37 159.8 133 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 6.8e-36 154.8 135 54.1
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 6.8e-36 154.8 154 50.0
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 1.1e-33 147.5 147 49.0
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 1.6e-32 143.7 91 70.3
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 3.5e-32 142.5 80 78.8
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 4.5e-32 142.1 130 52.3
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 5.9e-32 141.7 97 69.1
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 8.5e-31 137.9 224 36.6
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 2.1e-29 133.3 88 64.8
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 7.0e-25 118.2 83 63.9
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 4.5e-24 115.5 177 41.8
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 3.0e-20 102.8 180 37.2
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 2.0e-19 100.1 98 53.1
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.4e-09 66.6 64 56.2


User provided reference genes

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