Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G49470 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 5.5e-98 360.9 175 100.0
AL3G40990 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 1.8e-88 329.3 167 95.8
AL6G38890 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 9.4e-66 253.8 169 72.8
AL5G24470 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 2.1e-49 199.5 169 57.4
AL1G56990 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 7.0e-45 184.5 143 58.7
AL4G18060 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 3.5e-44 182.2 143 58.0
C09p37560 Brassica napus HOM05D008073 ORTHO05D000309 1.2e-25 120.6 189 37.6
AL2G19320 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 3.6e-25 119.0 64 73.4
BcaB03g15391 Brassica carinata HOM05D009173 ORTHO05D000309 1.5e-23 113.6 146 43.2
BcaC04g20956 Brassica carinata HOM05D008073 ORTHO05D000309 2.0e-23 113.2 210 33.8
BolC9t56587H Brassica oleracea HOM05D008073 ORTHO05D000309 2.0e-23 113.2 210 33.8
BraA09t38926Z Brassica rapa HOM05D009173 ORTHO05D000309 3.7e-22 109.0 143 44.1
BcaC08g43001 Brassica carinata HOM05D009173 ORTHO05D000309 2.7e-20 102.8 144 40.3
BcaC01g02494 Brassica carinata HOM05D009173 ORTHO05D000309 3.3e-18 95.9 145 40.0
Sp5g12640 Schrenkiella parvula HOM05D009173 ORTHO05D000309 2.8e-17 92.8 141 39.7
BcaC01g02366 Brassica carinata HOM05D009173 ORTHO05D000309 3.6e-17 92.4 151 41.1
BolC3t18879H Brassica oleracea HOM05D009173 ORTHO05D000309 3.6e-17 92.4 151 41.1
A07p31530 Brassica napus HOM05D008073 ORTHO05D000309 4.7e-17 92.0 161 35.4
BcaC07g38082 Brassica carinata HOM05D009173 ORTHO05D000309 6.2e-17 91.7 176 32.4
Sp5g18110 Schrenkiella parvula HOM05D009173 ORTHO05D000309 8.1e-17 91.3 167 37.1
Sp5g10600 Schrenkiella parvula HOM05D009173 ORTHO05D000309 1.4e-16 90.5 143 38.5
BcaC06g36745 Brassica carinata HOM05D008073 ORTHO05D031794 2.3e-16 89.7 144 35.4
BcaB03g15638 Brassica carinata HOM05D008073 ORTHO05D000309 8.9e-16 87.8 149 34.2
BcaB01g00830 Brassica carinata HOM05D008073 ORTHO05D000309 2.6e-15 86.3 141 34.8
BcaB04g19293 Brassica carinata HOM05D008073 ORTHO05D000309 6.4e-14 81.6 138 34.8
BcaC05g25280 Brassica carinata HOM05D008073 ORTHO05D000309 6.4e-14 81.6 141 34.8
BolC7t41302H Brassica oleracea HOM05D009173 ORTHO05D000309 6.4e-14 81.6 145 37.9
BcaB03g16006 Brassica carinata HOM05D007774 ORTHO05D000309 1.4e-13 80.5 74 45.9
BcaC06g36173 Brassica carinata HOM05D007774 ORTHO05D000309 2.4e-13 79.7 97 44.3
BolC7t43639H Brassica oleracea HOM05D008073 ORTHO05D000309 2.4e-13 79.7 146 33.6
BcaC03g14649 Brassica carinata HOM05D008073 ORTHO05D000309 3.2e-13 79.3 138 31.9
BolC4t24493H Brassica oleracea HOM05D008073 ORTHO05D000309 3.2e-13 79.3 140 39.3
BcaC01g02038 Brassica carinata HOM05D009173 ORTHO05D000309 4.1e-13 79.0 152 31.6
BolC3t19182H Brassica oleracea HOM05D009173 ORTHO05D000309 4.1e-13 79.0 152 31.6
BraA02t06821Z Brassica rapa HOM05D001038 ORTHO05D000395 5.4e-13 78.6 76 43.4
BcaC08g43835 Brassica carinata HOM05D007774 ORTHO05D000309 9.2e-13 77.8 96 43.8
AT1G67235 Arabidopsis thaliana HOM05D008073 ORTHO05D000309 1.2e-12 77.4 158 30.4
BcaB07g33982 Brassica carinata HOM05D007774 ORTHO05D000309 1.2e-12 77.4 76 50.0
BcaC08g45193 Brassica carinata HOM05D007774 ORTHO05D000309 1.2e-12 77.4 76 48.7
BcaC04g23317 Brassica carinata HOM05D009173 ORTHO05D000309 1.6e-12 77.0 102 39.2
BcaB06g26191 Brassica carinata HOM05D007774 ORTHO05D000309 2.1e-12 76.6 95 43.2
BcaB03g16083 Brassica carinata HOM05D007774 ORTHO05D000309 2.7e-12 76.3 76 48.7
BcaB06g27901 Brassica carinata HOM05D007774 ORTHO05D000309 2.7e-12 76.3 76 48.7
BcaB08g36370 Brassica carinata HOM05D008073 ORTHO05D000309 2.7e-12 76.3 144 33.3
BolC2t09377H Brassica oleracea HOM05D007774 ORTHO05D000309 2.7e-12 76.3 73 50.7
BcaB01g02010 Brassica carinata HOM05D007774 ORTHO05D000309 3.5e-12 75.9 76 48.7
BcaB07g33250 Brassica carinata HOM05D007774 ORTHO05D000309 3.5e-12 75.9 76 48.7
BcaB08g35933 Brassica carinata HOM05D007774 ORTHO05D000309 3.5e-12 75.9 76 48.7
BcaNung05585 Brassica carinata HOM05D007774 ORTHO05D000309 3.5e-12 75.9 76 48.7
BolC4t24443H Brassica oleracea HOM05D007774 ORTHO05D000309 4.6e-12 75.5 92 44.6
BraA02t06986Z Brassica rapa HOM05D007774 ORTHO05D000309 4.6e-12 75.5 76 48.7
BraA02t08177Z Brassica rapa HOM05D007774 ORTHO05D000309 4.6e-12 75.5 76 47.4
CARHR292260 Cardamine hirsuta HOM05D008073 ORTHO05D000309 4.6e-12 75.5 74 47.3
BolC3t19468H Brassica oleracea HOM05D008073 ORTHO05D000309 6.0e-12 75.1 142 33.8
BcaB02g11020 Brassica carinata HOM05D007774 ORTHO05D000309 7.8e-12 74.7 103 39.8
BolC6t36277H Brassica oleracea HOM05D009173 ORTHO05D027589 7.8e-12 74.7 133 35.3
C09p37880 Brassica napus HOM05D001038 ORTHO05D000395 1.0e-11 74.3 81 43.2
BolC1t03302H Brassica oleracea HOM05D008073 ORTHO05D000309 1.0e-11 74.3 131 35.9
BolC9t56621H Brassica oleracea HOM05D001038 ORTHO05D000395 1.0e-11 74.3 81 43.2
BcaB06g27506 Brassica carinata HOM05D007774 ORTHO05D000309 1.3e-11 73.9 75 48.0
BcaC01g02160 Brassica carinata HOM05D008073 ORTHO05D000309 1.3e-11 73.9 172 30.8
C03p68050 Brassica napus HOM05D008073 ORTHO05D000309 1.3e-11 73.9 172 30.8
BcaC01g02929 Brassica carinata HOM05D007774 ORTHO05D000309 1.7e-11 73.6 84 45.2
BcaC02g10529 Brassica carinata HOM05D007774 ORTHO05D000309 1.7e-11 73.6 76 47.4
BcaC04g20923 Brassica carinata HOM05D007774 ORTHO05D000395 1.7e-11 73.6 79 41.8
BcaB01g02175 Brassica carinata HOM05D007774 ORTHO05D000309 2.3e-11 73.2 76 46.1
BcaC03g17928 Brassica carinata HOM05D008073 ORTHO05D000309 2.3e-11 73.2 141 31.9
A02p37000 Brassica napus HOM05D008073 ORTHO05D000309 2.3e-11 73.2 161 31.7
BraA02t08687Z Brassica rapa HOM05D008073 ORTHO05D000309 2.3e-11 73.2 161 31.7
BcaB05g22492 Brassica carinata HOM05D007774 ORTHO05D000309 3.0e-11 72.8 103 38.8
BcaB05g22493 Brassica carinata HOM05D007774 ORTHO05D000309 3.0e-11 72.8 103 38.8
A04p08080 Brassica napus HOM05D008073 ORTHO05D000309 3.0e-11 72.8 142 30.3
BcaC08g43767 Brassica carinata HOM05D009173 ORTHO05D000309 3.9e-11 72.4 141 36.2
BolC8t48149H Brassica oleracea HOM05D008073 ORTHO05D000309 3.9e-11 72.4 126 35.7
BcaB01g01612 Brassica carinata HOM05D008073 ORTHO05D000309 6.6e-11 71.6 146 28.8
BcaB05g25086 Brassica carinata HOM05D008073 ORTHO05D000309 6.6e-11 71.6 140 28.6
BcaC02g10427 Brassica carinata HOM05D007774 ORTHO05D000309 6.6e-11 71.6 93 44.1
BcaC02g10455 Brassica carinata HOM05D007774 ORTHO05D000309 6.6e-11 71.6 98 43.9
BcaC04g22268 Brassica carinata HOM05D007774 ORTHO05D000309 6.6e-11 71.6 98 40.8
BcaC07g37763 Brassica carinata HOM05D008073 ORTHO05D000309 6.6e-11 71.6 95 41.1
BcaB05g24067 Brassica carinata HOM05D008073 ORTHO05D031741 8.6e-11 71.2 141 32.6
A01p38280 Brassica napus HOM05D001038 ORTHO05D000395 8.6e-11 71.2 72 43.1
C07p15530 Brassica napus HOM05D008073 ORTHO05D000309 8.6e-11 71.2 141 29.8
BolC6t36100H Brassica oleracea HOM05D007774 ORTHO05D000309 8.6e-11 71.2 76 46.1
BolC6t37988H Brassica oleracea HOM05D007774 ORTHO05D000309 8.6e-11 71.2 61 54.1
BraA04t16496Z Brassica rapa HOM05D008073 ORTHO05D000309 8.6e-11 71.2 142 30.3
BraA09t41073Z Brassica rapa HOM05D007774 ORTHO05D000309 8.6e-11 71.2 72 43.1
BcaB02g11517 Brassica carinata HOM05D007774 ORTHO05D000309 1.1e-10 70.9 76 43.4
BcaB06g26508 Brassica carinata HOM05D007774 ORTHO05D000309 1.1e-10 70.9 76 43.4
BcaB06g26754 Brassica carinata HOM05D007774 ORTHO05D000309 1.1e-10 70.9 76 43.4
BcaB06g27138 Brassica carinata HOM05D007774 ORTHO05D000309 1.1e-10 70.9 76 43.4
BcaC06g35486 Brassica carinata HOM05D008073 ORTHO05D000309 1.1e-10 70.9 141 29.8
BcaC06g36281 Brassica carinata HOM05D008073 ORTHO05D000309 1.1e-10 70.9 140 31.4
BcaC09g50115 Brassica carinata HOM05D008073 ORTHO05D000309 1.1e-10 70.9 129 33.3
BcaB01g01569 Brassica carinata HOM05D009173 ORTHO05D000309 1.5e-10 70.5 76 44.7
BcaB06g26984 Brassica carinata HOM05D008073 ORTHO05D000309 1.5e-10 70.5 165 30.3
BcaC05g26851 Brassica carinata HOM05D007774 ORTHO05D000309 1.5e-10 70.5 64 50.0
BcaB05g24508 Brassica carinata HOM05D001224 ORTHO05D000309 1.9e-10 70.1 73 43.8
BcaC06g36128 Brassica carinata HOM05D007774 ORTHO05D000395 1.9e-10 70.1 79 39.2
A01p24520 Brassica napus HOM05D008073 ORTHO05D000309 1.9e-10 70.1 141 31.2
C07p07480 Brassica napus HOM05D001038 ORTHO05D000395 1.9e-10 70.1 81 39.5
BolC7t41165H Brassica oleracea HOM05D007774 ORTHO05D000309 1.9e-10 70.1 81 39.5
BcaC04g20915 Brassica carinata HOM05D007774 ORTHO05D000309 2.5e-10 69.7 98 40.8
C06p11380 Brassica napus HOM05D009173 ORTHO05D027589 2.5e-10 69.7 76 47.4
BcaB02g11205 Brassica carinata HOM05D007774 ORTHO05D000309 3.3e-10 69.3 76 42.1
BcaB06g26683 Brassica carinata HOM05D007774 ORTHO05D000309 3.3e-10 69.3 76 42.1
BcaNung00231 Brassica carinata HOM05D008073 ORTHO05D000309 3.3e-10 69.3 146 29.5
CARHR102990 Cardamine hirsuta HOM05D009173 ORTHO05D000309 3.3e-10 69.3 74 43.2
BcaB05g23917 Brassica carinata HOM05D007774 ORTHO05D000309 4.3e-10 68.9 103 38.8
BcaC06g34090 Brassica carinata HOM05D007774 ORTHO05D000309 7.3e-10 68.2 96 38.5
BcaB06g28129 Brassica carinata HOM05D008073 ORTHO05D000309 9.6e-10 67.8 140 29.3
BolC3t19075H Brassica oleracea HOM05D007774 ORTHO05D000309 9.6e-10 67.8 98 39.8
BcaC01g01743 Brassica carinata HOM05D007774 ORTHO05D000309 1.6e-09 67.0 76 43.4
BcaB06g27418 Brassica carinata HOM05D007774 ORTHO05D000309 2.1e-09 66.6 76 42.1
BcaC04g20065 Brassica carinata HOM05D008073 ORTHO05D000309 2.1e-09 66.6 160 30.0
BcaC03g14058 Brassica carinata HOM05D008073 ORTHO05D000309 2.8e-09 66.2 133 33.1
BcaB02g11463 Brassica carinata HOM05D001224 ORTHO05D000309 4.7e-09 65.5 73 41.1
BcaC02g09596 Brassica carinata HOM05D007774 ORTHO05D000309 4.7e-09 65.5 77 42.9
BolC7t41880H Brassica oleracea HOM05D008073 ORTHO05D000309 4.7e-09 65.5 62 46.8
BcaB02g10845 Brassica carinata HOM05D008073 ORTHO05D000309 6.2e-09 65.1 141 30.5
BcaC04g20561 Brassica carinata HOM05D008073 ORTHO05D000309 6.2e-09 65.1 123 30.9
C09p42090 Brassica napus HOM05D008073 ORTHO05D000309 6.2e-09 65.1 123 30.9
A05p13640 Brassica napus HOM05D008073 ORTHO05D000309 8.1e-09 64.7 59 49.2
C06p04030 Brassica napus HOM05D012943 ORTHO05D039056 8.1e-09 64.7 74 43.2
Peaxi162Scf00562g00008 Petunia axillaris HOM05D004040 ORTHO05D000309 8.1e-09 64.7 48 56.2
Peaxi162Scf01167g00009 Petunia axillaris HOM05D004040 ORTHO05D000309 8.1e-09 64.7 48 56.2
AL3G46750 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 1.1e-08 64.3 141 33.3
BcaB06g26646 Brassica carinata HOM05D007774 ORTHO05D000309 1.1e-08 64.3 76 42.1
Nitab4.5_0007534g0030 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.1e-08 64.3 137 32.8
BcaB06g28160 Brassica carinata HOM05D008073 ORTHO05D000309 1.4e-08 63.9 77 40.3
BcaB07g33163 Brassica carinata HOM05D012943 ORTHO05D027589 1.4e-08 63.9 85 42.4
Nitab4.5_0007686g0050 Nicotiana tabacum HOM05D000011 ORTHO05D000018 1.4e-08 63.9 175 27.4
BcaB02g11450 Brassica carinata HOM05D007774 ORTHO05D000309 1.8e-08 63.5 132 31.8
BcaB04g16980 Brassica carinata HOM05D007774 ORTHO05D000309 4.0e-08 62.4 77 44.2
Peaxi162Scf00914g00516 Petunia axillaris HOM05D004040 ORTHO05D000309 4.0e-08 62.4 48 54.2
Sp5g17920 Schrenkiella parvula HOM05D008073 ORTHO05D000309 5.2e-08 62.0 144 29.9
BcaB02g11208 Brassica carinata HOM05D007774 ORTHO05D000309 6.8e-08 61.6 76 39.5
Lj4P203T20 Lonicera japonica HOM05D008126 ORTHO05D000309 6.8e-08 61.6 134 26.9
AL8G21820 Arabidopsis lyrata HOM05D007774 ORTHO05D000309 8.9e-08 61.2 72 40.3
AT5G33393 Arabidopsis thaliana HOM05D008073 ORTHO05D081038 8.9e-08 61.2 74 40.5
BcaNung03185 Brassica carinata HOM05D007774 ORTHO05D000309 8.9e-08 61.2 75 40.0
C09p42360 Brassica napus HOM05D008073 ORTHO05D000309 8.9e-08 61.2 69 39.1
BolC9t57115H Brassica oleracea HOM05D008073 ORTHO05D000309 8.9e-08 61.2 69 39.1
Nitab4.5_0001931g0130 Nicotiana tabacum HOM05D001883 ORTHO05D002184 8.9e-08 61.2 149 30.2
AUR62043336 Chenopodium quinoa HOM05D005931 ORTHO05D005553 1.5e-07 60.5 131 24.4
DCAR_017629 Daucus carota HOM05D001383 ORTHO05D000309 1.5e-07 60.5 82 42.7
AT1G52603 Arabidopsis thaliana HOM05D008073 ORTHO05D000309 2.0e-07 60.1 48 47.9
BcaB08g36585 Brassica carinata HOM05D007774 ORTHO05D000309 2.0e-07 60.1 95 37.9
AUR62020269 Chenopodium quinoa HOM05D005931 ORTHO05D005553 2.0e-07 60.1 150 26.0
BcaB05g23793 Brassica carinata HOM05D007774 ORTHO05D000309 3.4e-07 59.3 75 38.7
Lj5P838T14 Lonicera japonica HOM05D008126 ORTHO05D000309 3.4e-07 59.3 133 27.8
C07p05860 Brassica napus HOM05D001957 ORTHO05D002015 4.4e-07 58.9 114 32.5
Nitab4.5_0003017g0010 Nicotiana tabacum HOM05D001883 ORTHO05D002184 4.4e-07 58.9 147 26.5
BcaB02g11157 Brassica carinata HOM05D008073 ORTHO05D000309 5.8e-07 58.5 132 28.0
BcaB03g16062 Brassica carinata HOM05D008073 ORTHO05D000309 5.8e-07 58.5 85 37.6
BcaC02g08062 Brassica carinata HOM05D009173 ORTHO05D000309 5.8e-07 58.5 104 35.6
Peaxi162Scf00043g00065 Petunia axillaris HOM05D004040 ORTHO05D000309 5.8e-07 58.5 72 40.3
Peaxi162Scf00274g00613 Petunia axillaris HOM05D004040 ORTHO05D000309 5.8e-07 58.5 72 40.3
Peaxi162Scf00677g00029 Petunia axillaris HOM05D004040 ORTHO05D000309 5.8e-07 58.5 72 40.3
BolC8t49310H Brassica oleracea HOM05D007774 ORTHO05D000309 7.6e-07 58.2 75 44.0
Lj4E150G0 Lonicera japonica HOM05D008126 ORTHO05D000309 7.6e-07 58.2 139 27.3
Lj8P545T2 Lonicera japonica HOM05D008126 ORTHO05D000309 7.6e-07 58.2 128 27.3
Peaxi162Scf00562g00026 Petunia axillaris HOM05D004040 ORTHO05D000309 7.6e-07 58.2 48 52.1
HanXRQChr03g0077471 Helianthus annuus HOM05D001383 ORTHO05D000309 9.9e-07 57.8 93 33.3
Lj2P78T23 Lonicera japonica HOM05D008126 ORTHO05D000309 9.9e-07 57.8 127 26.8
Lj5P426T12 Lonicera japonica HOM05D008126 ORTHO05D000309 1.3e-06 57.4 128 27.3
Nitab4.5_0000101g0100 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.3e-06 57.4 71 40.8
SGA_v2.0_scaffold14G06948 Striga asiatica HOM05D001383 ORTHO05D000309 1.3e-06 57.4 47 44.7
BcaB06g27156 Brassica carinata HOM05D008073 ORTHO05D000309 1.7e-06 57.0 136 29.4
BcaC06g34813 Brassica carinata HOM05D009173 ORTHO05D000309 1.7e-06 57.0 108 32.4
DCAR_030173 Daucus carota HOM05D001383 ORTHO05D000309 1.7e-06 57.0 44 54.5
Nitab4.5_0004598g0010 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.7e-06 57.0 104 34.6
Nitab4.5_0008808g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.7e-06 57.0 66 43.9
Lj2P1096T11 Lonicera japonica HOM05D008126 ORTHO05D000309 2.2e-06 56.6 128 27.3
Nitab4.5_0000129g0270 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.2e-06 56.6 73 41.1
Nitab4.5_0002367g0200 Nicotiana tabacum HOM05D001883 ORTHO05D002184 2.2e-06 56.6 141 27.7
Lj3P238T23 Lonicera japonica HOM05D008126 ORTHO05D000309 2.9e-06 56.2 74 33.8
Peaxi162Scf00951g00214 Petunia axillaris HOM05D001883 ORTHO05D002184 2.9e-06 56.2 131 29.8
Peaxi162Scf01138g00111 Petunia axillaris HOM05D004040 ORTHO05D000309 2.9e-06 56.2 44 52.3
DCAR_029331 Daucus carota HOM05D001383 ORTHO05D000309 3.8e-06 55.8 92 34.8
BcaB08g35546 Brassica carinata HOM05D007774 ORTHO05D000309 4.9e-06 55.5 76 39.5
Lj3P12T7 Lonicera japonica HOM05D008126 ORTHO05D000309 4.9e-06 55.5 123 27.6
Lj9P287T24 Lonicera japonica HOM05D008126 ORTHO05D000309 4.9e-06 55.5 128 26.6
Nitab4.5_0000463g0060 Nicotiana tabacum HOM05D004040 ORTHO05D000309 4.9e-06 55.5 66 42.4
Nitab4.5_0001226g0050 Nicotiana tabacum HOM05D001883 ORTHO05D002184 4.9e-06 55.5 64 42.2
Lj6P58T20 Lonicera japonica HOM05D008126 ORTHO05D000309 8.4e-06 54.7 74 33.8
Lj8P510T6 Lonicera japonica HOM05D008126 ORTHO05D000309 8.4e-06 54.7 127 26.8
Nitab4.5_0001117g0080 Nicotiana tabacum HOM05D004040 ORTHO05D000309 8.4e-06 54.7 80 37.5


User provided reference genes

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