Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 5.7e-232 807.4 451 100.0
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 6.8e-68 262.3 184 75.5
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 3.4e-67 260.0 186 73.1
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 1.0e-63 248.4 185 71.9
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 1.7e-63 247.7 183 71.6
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 7.3e-62 242.3 184 69.6
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 7.3e-62 242.3 184 69.6
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 7.3e-62 242.3 184 69.6
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 5.2e-60 236.1 183 68.9
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 6.8e-52 209.1 192 61.5
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 4.4e-51 206.5 209 62.7
Sp6g03580 Schrenkiella parvula HOM05D012310 ORTHO05D012594 4.9e-50 203.0 172 62.8
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 6.4e-50 202.6 186 60.8
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 1.0e-23 115.5 434 30.2
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 3.3e-22 110.5 390 30.3
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 9.6e-22 109.0 220 39.5
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 4.8e-21 106.7 434 29.3
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 3.1e-20 104.0 207 40.1
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 1.2e-19 102.1 468 27.8
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.5e-19 101.7 179 37.4
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.0e-19 101.3 298 32.9
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.4e-19 100.5 180 38.3
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 4.5e-19 100.1 181 40.3
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 3.8e-18 97.1 187 39.6
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.0e-18 96.7 180 37.8
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.2e-17 94.0 181 39.2
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.2e-17 94.0 183 39.3
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 3.2e-17 94.0 180 37.2
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.1e-16 91.3 186 38.2
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 1.3e-15 88.6 438 25.1
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.0e-15 87.4 435 27.8
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.0e-15 87.4 204 36.3
AL4G46480 Arabidopsis lyrata HOM05D012310 ORTHO05D080413 5.1e-15 86.7 57 70.2
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.1e-14 85.5 169 36.1
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.3e-14 83.6 168 36.9
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 4.3e-14 83.6 184 37.0
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 4.3e-14 83.6 184 37.0
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.7e-14 83.2 175 36.0
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 2.8e-13 80.9 172 37.2
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 2.8e-13 80.9 172 37.2
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 6.3e-13 79.7 194 36.6
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.3e-13 79.7 169 39.1
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-12 79.0 184 35.9
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.1e-12 79.0 185 32.4
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.8e-12 78.2 179 35.2
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 2.4e-12 77.8 174 35.1
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.4e-12 77.8 231 34.6
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 3.1e-12 77.4 165 39.4
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 5.3e-12 76.6 195 31.8
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 2.0e-11 74.7 172 36.0
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.0e-11 74.7 177 35.6
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.6e-11 74.3 172 34.9
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.6e-11 74.3 169 36.1
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 2.6e-11 74.3 169 36.1
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 4.5e-11 73.6 172 35.5
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 4.5e-11 73.6 194 34.0
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.7e-11 72.8 144 40.3
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.0e-10 72.4 149 38.9
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 1.3e-10 72.0 187 32.1
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 2.2e-10 71.2 170 37.6
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-09 68.9 168 35.1
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 1.1e-09 68.9 187 31.6
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 1.1e-09 68.9 168 35.1
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.5e-09 67.8 191 35.6
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 2.5e-09 67.8 168 34.5
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 2.5e-09 67.8 168 35.1
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 2.5e-09 67.8 182 31.3
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 4.2e-09 67.0 445 25.8
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 4.2e-09 67.0 85 41.2
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 5.5e-09 66.6 172 30.2
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.5e-09 66.6 216 30.6
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 7.2e-09 66.2 187 30.5
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-08 65.5 174 30.5
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.6e-08 65.1 194 32.5
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 2.1e-08 64.7 173 31.8
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.6e-08 63.9 215 29.3
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 7.9e-08 62.8 149 35.6
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 7.9e-08 62.8 132 40.2
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 1.0e-07 62.4 167 32.9
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 3.0e-07 60.8 174 33.3
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 3.9e-07 60.5 194 29.4
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 8.8e-07 59.3 174 29.9
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 1.5e-06 58.5 173 32.4
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-06 58.2 143 35.7
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 2.0e-06 58.2 141 33.3
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.3e-06 57.4 199 34.2
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 4.3e-06 57.0 193 26.9
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 9.7e-06 55.8 206 28.6


User provided reference genes

Program Settings