Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 2.4e-121 439.1 262 100.0
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 2.5e-94 349.4 260 78.5
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 2.2e-79 299.7 263 75.7
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 1.3e-71 273.9 264 70.1
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 1.6e-69 266.9 264 68.2
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 1.6e-69 266.9 264 68.2
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 1.6e-69 266.9 264 68.2
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 3.0e-68 262.7 184 75.5
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 4.0e-68 262.3 264 68.6
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 1.2e-61 240.7 275 66.5
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 2.0e-59 233.4 272 61.4
Sp6g03580 Schrenkiella parvula HOM05D012310 ORTHO05D012594 1.2e-56 224.2 169 67.5
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 3.0e-52 209.5 262 53.4
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 2.1e-24 117.1 163 45.4
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 2.7e-24 116.7 166 45.8
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 5.2e-20 102.4 169 39.6
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.8e-20 102.1 172 39.5
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 8.9e-20 101.7 172 39.5
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.2e-19 101.3 171 37.4
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 1.5e-19 100.9 169 40.2
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 1.5e-19 100.9 169 40.2
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 4.4e-19 99.4 170 38.2
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 2.2e-18 97.1 164 40.9
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.9e-18 96.7 169 40.2
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.9e-18 96.7 169 40.8
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.4e-17 94.4 171 35.7
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.2e-17 92.8 172 36.6
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.4e-17 92.4 174 37.9
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 5.4e-17 92.4 168 40.5
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.1e-17 92.0 170 37.6
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.6e-16 90.9 174 33.9
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.1e-16 90.5 164 38.4
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 2.1e-16 90.5 164 38.4
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.1e-16 90.5 171 35.1
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.7e-16 90.1 163 39.3
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.5e-16 89.7 169 38.5
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 4.6e-16 89.4 164 40.2
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 4.6e-16 89.4 164 40.2
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 4.6e-16 89.4 164 40.2
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 6.0e-16 89.0 171 37.4
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.8e-16 88.6 163 40.5
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 1.7e-15 87.4 169 36.7
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 2.3e-15 87.0 169 37.3
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 2.3e-15 87.0 169 36.7
AL4G46480 Arabidopsis lyrata HOM05D012310 ORTHO05D080413 3.9e-15 86.3 57 70.2
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 5.1e-15 85.9 169 36.1
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 1.1e-14 84.7 174 36.2
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.3e-14 83.2 169 35.5
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.3e-14 82.8 161 37.3
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 7.3e-14 82.0 171 38.6
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 7.3e-14 82.0 163 35.0
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 9.6e-14 81.6 160 39.4
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 9.6e-14 81.6 193 32.1
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 2.8e-13 80.1 169 34.9
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 2.8e-13 80.1 171 34.5
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 3.6e-13 79.7 146 39.0
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 3.6e-13 79.7 169 35.5
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 8.1e-13 78.6 136 39.0
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-12 77.8 170 37.6
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.1e-12 76.6 163 35.0
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.0e-12 76.3 163 34.4
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 5.3e-12 75.9 177 33.9
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 9.0e-12 75.1 172 33.7
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.0e-11 73.9 149 34.9
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 4.4e-11 72.8 162 35.8
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 4.4e-11 72.8 162 35.8
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 4.4e-11 72.8 162 36.4
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 7.6e-11 72.0 162 35.8
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-10 71.2 170 34.7
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 8.4e-10 68.6 173 34.1
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 8.4e-10 68.6 160 33.1
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 8.4e-10 68.6 160 33.1
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.4e-09 67.8 121 41.3
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.9e-09 67.4 168 33.3
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 7.1e-09 65.5 111 37.8
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 9.3e-09 65.1 88 45.5
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-08 64.7 164 32.9
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 2.1e-08 63.9 168 31.5
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.7e-08 63.5 169 30.2
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.5e-08 63.2 158 31.0
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.5e-08 63.2 168 32.1
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.5e-08 63.2 164 30.5
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 4.6e-08 62.8 158 31.6
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.6e-08 62.8 85 44.7
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 7.8e-08 62.0 163 33.1
THA.LOC104801560 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.7e-07 60.8 146 30.8
THA.LOC104801558 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.6e-07 58.9 144 30.6
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.5e-06 57.0 165 33.3


User provided reference genes

Program Settings