Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.5e-172 609.4 304 100.0
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 5.2e-88 328.6 213 77.9
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.9e-78 296.2 211 71.1
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.2e-61 239.2 298 49.7
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-52 211.1 212 56.6
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 3.5e-52 209.5 196 60.2
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 1.4e-48 197.6 151 64.2
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.0e-47 193.7 209 55.5
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 4.5e-47 192.6 172 59.9
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 7.6e-47 191.8 216 51.4
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 5.1e-43 179.1 174 55.2
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-42 177.6 221 49.8
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 1.9e-34 150.6 212 46.2
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 8.2e-33 145.2 141 54.6
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 8.2e-33 145.2 225 45.8
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 3.4e-31 139.8 184 48.4
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.4e-24 117.9 217 40.6
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 5.3e-24 115.9 149 49.0
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-23 114.8 149 47.7
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.3e-22 111.3 146 47.3
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.8e-22 109.8 145 46.9
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 5.0e-22 109.4 205 36.6
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 1.4e-21 107.8 191 37.7
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 2.5e-21 107.1 184 38.6
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 9.4e-21 105.1 143 42.7
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-20 104.8 155 41.3
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.6e-20 104.4 145 46.2
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.6e-20 104.4 210 37.6
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-20 104.0 168 39.3
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 2.1e-20 104.0 145 46.9
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-20 103.2 153 41.8
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-19 101.7 142 43.0
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 1.0e-19 101.7 141 45.4
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-19 100.5 142 41.5
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 3.0e-19 100.1 146 41.1
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 3.9e-19 99.8 142 39.4
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 3.9e-19 99.8 142 38.7
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 3.9e-19 99.8 142 39.4
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 5.1e-19 99.4 145 41.4
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 5.1e-19 99.4 147 41.5
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 5.1e-19 99.4 144 43.8
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 5.1e-19 99.4 144 43.8
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 6.7e-19 99.0 142 40.8
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 6.7e-19 99.0 142 38.7
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 6.7e-19 99.0 142 38.7
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 8.8e-19 98.6 142 39.4
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-18 98.2 142 38.7
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-18 98.2 201 31.8
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 1.5e-18 97.8 57 78.9
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 2.0e-18 97.4 142 38.0
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 2.0e-18 97.4 143 42.7
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.3e-18 96.7 168 41.1
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 3.3e-18 96.7 143 41.3
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 3.3e-18 96.7 143 41.3
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.4e-18 96.3 234 32.9
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 5.7e-18 95.9 143 41.3
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 7.4e-18 95.5 145 40.7
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 7.4e-18 95.5 145 40.7
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.3e-17 94.7 174 39.7
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.7e-17 94.4 148 39.9
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 2.2e-17 94.0 143 40.6
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.7e-17 93.2 166 36.7
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 4.8e-17 92.8 143 39.2
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 6.3e-17 92.4 200 37.5
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 6.3e-17 92.4 200 37.5
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 8.2e-17 92.0 143 40.6
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-16 91.7 164 36.6
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-16 91.7 200 33.0
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-16 91.7 214 34.6
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-16 91.7 208 32.7
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-16 91.7 214 34.6
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-16 91.7 168 36.9
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.1e-16 91.7 224 36.2
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 1.8e-16 90.9 203 36.5
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 1.8e-16 90.9 203 36.5
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.4e-16 90.5 198 33.3
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-16 90.5 144 40.3
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-16 90.5 152 38.2
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 2.4e-16 90.5 143 39.2
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 3.1e-16 90.1 212 29.2
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.3e-16 89.4 155 38.1
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 5.3e-16 89.4 213 32.9
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 7.0e-16 89.0 198 31.3
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 9.1e-16 88.6 166 34.9
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.6e-15 87.8 165 35.8
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 1.6e-15 87.8 167 35.9
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 3.5e-15 86.7 191 36.1
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.5e-15 86.3 142 36.6
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.7e-15 85.5 205 36.6
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.7e-15 85.5 205 36.6
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 7.7e-15 85.5 198 35.4
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.0e-14 85.1 145 37.9
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.0e-14 85.1 142 38.7
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.0e-14 85.1 160 36.2
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 1.0e-14 85.1 160 36.2
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 1.0e-14 85.1 160 36.2
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-14 84.7 146 37.7
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.3e-14 84.7 167 36.5
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 1.7e-14 84.3 203 34.5
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.2e-14 84.0 227 37.0
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.9e-14 83.6 144 36.8
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.9e-14 83.6 117 38.5
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 2.9e-14 83.6 180 32.2
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 5.0e-14 82.8 176 36.4
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 6.5e-14 82.4 205 34.6
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 8.5e-14 82.0 140 42.9
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-13 81.6 214 33.2
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.9e-13 80.9 142 38.0
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 2.5e-13 80.5 140 41.4
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.2e-13 80.1 141 34.8
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.2e-13 80.1 141 37.6
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 4.2e-13 79.7 154 37.0
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 5.5e-13 79.3 207 35.3
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 7.2e-13 79.0 204 35.3
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 7.2e-13 79.0 149 36.2
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.2e-12 78.2 147 34.0
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.2e-12 78.2 148 33.8
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 1.6e-12 77.8 149 35.6
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-12 77.8 134 39.6
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 1.6e-12 77.8 149 35.6
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 1.6e-12 77.8 149 35.6
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.1e-12 77.4 209 33.0
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 2.1e-12 77.4 134 39.6
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.7e-12 77.0 142 30.3
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.0e-11 75.1 163 33.1
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.0e-11 75.1 138 32.6
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-11 75.1 139 33.1
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.4e-11 74.7 142 34.5
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 1.4e-11 74.7 181 33.7
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.3e-11 73.9 181 32.6
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 4.0e-11 73.2 139 36.7
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.2e-11 72.8 138 31.2
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.7e-11 72.4 147 37.4
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.8e-11 72.0 142 33.8
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.1e-10 71.6 213 29.1
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 1.1e-10 71.6 145 35.2
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.5e-10 71.2 199 29.6
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.6e-10 70.5 187 33.2
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 2.6e-10 70.5 165 35.8
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 4.4e-10 69.7 144 36.8
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.4e-10 69.7 221 32.6
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 7.5e-10 68.9 159 35.2
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.3e-09 68.2 206 31.1
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 3.7e-09 66.6 89 37.1
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 3.7e-09 66.6 208 30.3
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 6.3e-09 65.9 142 35.2
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.8e-08 64.3 150 32.7
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 3.1e-08 63.5 151 31.1
AT3G05685 Arabidopsis thaliana HOM05D004201 ORTHO05D031360 4.1e-08 63.2 69 47.8
AT3G05450 Arabidopsis thaliana HOM05D004201 ORTHO05D011677 7.0e-08 62.4 222 30.2
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.0e-07 60.8 205 31.2
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.5e-07 59.7 63 47.6
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 5.9e-07 59.3 208 30.8


User provided reference genes

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