Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 8.8e-168 593.6 309 100.0
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 1.6e-156 556.2 311 94.5
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 1.7e-142 509.6 309 87.7
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.5e-138 496.5 309 84.8
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 6.2e-137 491.1 309 85.1
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 4.6e-132 474.9 309 81.9
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 1.3e-126 456.8 310 79.0
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 1.7e-126 456.4 310 79.4
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 4.9e-126 454.9 310 79.0
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 5.4e-125 451.4 310 78.7
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 5.4e-125 451.4 310 78.7
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.3e-123 446.8 310 79.0
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 4.0e-120 435.3 313 76.0
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 6.9e-88 328.2 314 61.8
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 9.1e-72 274.6 311 53.4
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 1.6e-71 273.9 316 51.9
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 3.5e-71 272.7 313 52.7
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 2.2e-70 270.0 314 51.9
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.6e-68 263.8 304 50.7
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 8.0e-68 261.5 312 51.6
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 3.0e-67 259.6 310 50.6
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 3.0e-67 259.6 311 50.5
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 8.8e-67 258.1 309 50.2
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 8.8e-67 258.1 310 50.6
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 2.8e-65 253.1 304 51.3
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 3.7e-65 252.7 309 51.8
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 3.1e-64 249.6 341 49.6
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 5.9e-63 245.4 307 50.8
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 7.7e-63 245.0 312 47.4
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 1.7e-62 243.8 310 47.4
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 2.9e-62 243.0 309 48.9
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 5.0e-62 242.3 312 48.4
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 6.5e-62 241.9 314 46.5
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 8.5e-62 241.5 309 51.1
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 8.5e-62 241.5 303 50.8
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 1.5e-61 240.7 307 48.2
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 2.5e-61 240.0 307 50.2
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 4.2e-61 239.2 309 51.8
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 5.5e-61 238.8 309 51.8
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 7.2e-61 238.4 309 51.8
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.2e-60 237.7 309 51.5
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.6e-60 237.3 312 45.8
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 4.7e-60 235.7 307 49.8
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 6.1e-60 235.3 311 51.8
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 6.1e-60 235.3 312 47.1
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 2.3e-59 233.4 312 47.1
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 3.0e-59 233.0 313 46.3
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 4.0e-59 232.6 307 45.9
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 5.2e-59 232.3 310 45.8
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 1.2e-58 231.1 315 47.0
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 1.5e-58 230.7 310 45.8
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 2.6e-58 229.9 310 46.1
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 3.4e-58 229.6 313 43.8
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 7.5e-58 228.4 305 47.2
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 7.5e-58 228.4 316 44.6
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 9.8e-58 228.0 307 45.0
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 9.8e-58 228.0 310 43.2
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.7e-57 227.3 315 44.4
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 1.7e-57 227.3 322 46.9
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.2e-57 226.9 313 45.7
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 8.3e-57 224.9 309 46.6
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 7.0e-56 221.9 290 46.2
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 9.1e-56 221.5 325 44.6
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 9.1e-56 221.5 311 45.7
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 2.0e-55 220.3 294 45.2
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 2.7e-55 219.9 311 45.3
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 3.5e-55 219.5 318 46.5
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 7.7e-55 218.4 312 44.2
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 1.0e-54 218.0 254 50.4
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.7e-54 217.2 311 48.2
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.7e-54 217.2 310 45.8
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.5e-53 214.2 317 42.3
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.9e-53 213.8 312 42.6
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.2e-53 213.0 314 42.4
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 7.2e-53 211.8 320 43.1
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 9.4e-53 211.5 319 45.1
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 2.7e-52 209.9 320 43.1
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 6.1e-52 208.8 312 43.9
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 8.0e-52 208.4 321 43.0
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 8.0e-52 208.4 289 45.3
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.4e-51 207.6 314 41.7
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 2.3e-51 206.8 289 46.0
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 2.3e-51 206.8 318 43.1
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 3.0e-51 206.5 322 42.9
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 4.0e-51 206.1 308 43.5
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 4.0e-51 206.1 321 42.7
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 5.2e-51 205.7 308 43.5
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 5.2e-51 205.7 273 46.2
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 6.8e-51 205.3 314 41.7
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 6.8e-51 205.3 314 41.7
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 1.2e-50 204.5 311 40.8
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 2.6e-50 203.4 312 41.3
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 4.4e-50 202.6 308 43.2
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 5.7e-50 202.2 311 41.8
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 2.8e-49 199.9 312 41.7
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 1.4e-48 197.6 294 42.2
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 2.4e-48 196.8 310 42.3
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 9.2e-48 194.9 319 42.0
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 1.6e-47 194.1 286 42.3
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 3.5e-47 193.0 321 40.8
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 3.5e-47 193.0 332 39.2
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 3.5e-47 193.0 332 39.2
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.9e-46 189.9 287 43.2
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 3.8e-46 189.5 310 41.3
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 8.6e-46 188.3 247 47.4
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 1.1e-45 188.0 203 56.7
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.5e-45 187.6 311 40.2
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 3.6e-44 183.0 317 40.1
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 4.7e-44 182.6 310 39.7
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 1.0e-43 181.4 310 39.7
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 1.8e-43 180.6 277 42.6
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 3.0e-43 179.9 275 41.8
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 6.8e-43 178.7 272 43.8
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.5e-42 177.6 310 39.0
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 2.6e-42 176.8 256 45.7
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.2e-41 173.7 285 41.4
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.9e-41 173.3 285 41.4
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 2.0e-39 167.2 300 40.3
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 1.7e-38 164.1 277 42.2
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 3.7e-33 146.4 261 41.8
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 9.5e-29 131.7 157 49.7
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 4.9e-25 119.4 265 35.1
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 2.1e-23 114.0 176 40.9
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 7.3e-21 105.5 129 48.8
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 4.1e-16 89.7 226 33.6
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 1.8e-11 74.3 137 38.7
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 1.8e-11 74.3 105 46.7
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.7e-09 67.8 162 35.8
C03p36620 Brassica napus HOM05D006030 ORTHO05D007475 1.4e-08 64.7 55 69.1
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 5.4e-08 62.8 83 45.8


User provided reference genes

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