Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 6.6e-145 517.3 254 100.0
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.5e-133 479.6 281 86.1
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 8.7e-129 463.8 281 83.6
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 3.3e-120 435.3 272 79.8
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 2.4e-118 429.1 258 81.4
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 4.0e-118 428.3 282 78.0
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 3.4e-117 425.2 275 77.5
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 2.5e-104 382.5 276 68.8
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 4.2e-99 365.2 272 66.9
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 9.4e-99 364.0 271 67.2
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.6e-98 363.2 272 66.5
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 3.9e-97 358.6 278 65.5
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 3.3e-96 355.5 278 64.7
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 2.8e-95 352.4 277 63.5
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 3.2e-91 339.0 277 60.3
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 5.5e-91 338.2 276 62.7
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 9.4e-91 337.4 277 59.9
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 9.4e-91 337.4 277 60.3
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 2.1e-90 336.3 276 59.8
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 2.1e-90 336.3 276 60.5
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 3.6e-90 335.5 273 60.4
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 6.1e-90 334.7 276 60.1
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 1.0e-89 334.0 276 60.1
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.8e-89 333.2 276 59.4
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 3.9e-89 332.0 277 58.5
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 3.9e-89 332.0 274 61.7
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 5.1e-89 331.6 277 58.1
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 5.1e-89 331.6 274 61.7
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 6.7e-89 331.3 274 61.7
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 8.8e-89 330.9 273 59.0
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 1.1e-88 330.5 276 60.1
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.1e-88 330.5 276 60.1
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 2.0e-88 329.7 274 61.3
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 5.7e-88 328.2 277 58.1
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 7.4e-88 327.8 274 60.6
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 7.4e-88 327.8 277 60.3
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 7.4e-88 327.8 275 59.3
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.3e-87 327.0 273 59.0
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.7e-87 326.6 277 59.9
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 1.7e-87 326.6 275 59.6
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.8e-87 325.9 274 59.1
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 3.7e-87 325.5 270 58.1
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 3.7e-87 325.5 276 59.1
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 4.8e-87 325.1 278 58.3
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 1.1e-86 323.9 277 57.0
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 1.8e-86 323.2 272 59.2
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.8e-86 323.2 273 57.5
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.1e-86 322.4 276 57.6
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 4.1e-86 322.0 272 56.6
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 5.3e-86 321.6 275 56.4
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 7.0e-86 321.2 276 56.9
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 9.1e-86 320.9 274 56.9
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.2e-85 320.5 276 59.1
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 1.6e-85 320.1 276 58.7
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.6e-85 320.1 271 57.2
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 2.0e-85 319.7 274 57.3
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.6e-85 319.3 272 56.6
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 3.5e-85 318.9 274 56.9
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 5.9e-85 318.2 277 58.8
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 5.9e-85 318.2 275 56.7
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 5.9e-85 318.2 280 57.1
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 7.7e-85 317.8 276 57.6
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 1.0e-84 317.4 275 57.5
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.0e-84 317.4 274 56.9
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 1.0e-84 317.4 272 58.5
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.0e-84 317.4 277 56.7
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.0e-84 317.4 276 56.9
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 1.3e-84 317.0 276 56.5
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 1.3e-84 317.0 272 57.7
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 2.9e-84 315.8 278 57.9
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 3.8e-84 315.5 274 59.5
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 3.8e-84 315.5 276 55.4
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 3.8e-84 315.5 276 55.4
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 3.8e-84 315.5 274 58.4
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 8.5e-84 314.3 275 56.4
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 8.5e-84 314.3 276 56.9
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.1e-83 313.9 277 55.2
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 1.1e-83 313.9 273 57.5
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.5e-83 313.5 276 55.1
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.5e-83 313.5 247 62.3
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 1.9e-83 313.2 273 58.6
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 1.9e-83 313.2 271 56.5
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 2.5e-83 312.8 276 55.4
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 4.2e-83 312.0 271 57.9
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 7.2e-83 311.2 276 56.2
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 2.1e-82 309.7 275 55.3
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 2.1e-82 309.7 275 55.3
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 2.7e-82 309.3 276 56.2
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.7e-82 309.3 276 57.2
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 3.6e-82 308.9 276 54.7
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 4.7e-82 308.5 276 55.1
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 4.7e-82 308.5 276 56.9
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 6.1e-82 308.1 248 62.5
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 8.0e-82 307.8 275 55.3
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.3e-81 306.2 255 59.2
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 4.0e-81 305.4 266 56.8
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 6.7e-81 304.7 276 56.2
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 6.7e-81 304.7 275 55.6
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 8.8e-81 304.3 276 55.1
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.1e-80 303.9 276 55.1
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.7e-79 300.1 276 54.0
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 2.2e-79 299.7 277 57.0
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 3.7e-79 298.9 276 55.4
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 4.8e-79 298.5 274 52.6
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 4.1e-78 295.4 279 53.4
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 9.1e-78 294.3 276 54.3
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 2.7e-77 292.7 278 52.9
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 5.9e-77 291.6 275 53.5
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 7.7e-77 291.2 277 54.2
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 9.4e-75 284.3 283 52.7
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.6e-72 276.2 276 52.9
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 3.4e-72 275.8 278 50.0
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 3.4e-72 275.8 202 64.4
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 7.5e-72 274.6 272 51.5
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 2.4e-70 269.6 265 51.7
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 5.4e-70 268.5 204 62.7
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 4.7e-66 255.4 303 44.9
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 8.0e-66 254.6 202 61.4
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 1.0e-65 254.2 193 65.8
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 1.3e-63 247.3 254 53.5
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 2.3e-60 236.5 203 55.2
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 6.1e-58 228.4 259 47.1
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 8.9e-57 224.6 280 44.3
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.5e-56 223.8 280 42.9
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 4.4e-56 222.2 207 53.6
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.7e-55 219.2 287 41.5
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.0e-52 209.5 193 53.4
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 3.9e-52 209.1 187 54.5
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.9e-51 206.8 153 68.6
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 1.8e-49 200.3 171 52.0
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 1.8e-49 200.3 171 57.9
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 8.9e-49 198.0 309 37.9
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 4.9e-47 192.2 169 53.8
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 2.5e-43 179.9 195 48.2
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 1.9e-38 163.7 289 34.6
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 1.6e-34 150.6 196 41.3
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 6.8e-33 145.2 150 48.7
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 2.0e-32 143.7 104 61.5
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 8.4e-31 138.3 245 36.3
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 5.4e-30 135.6 154 45.5
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.2e-29 134.4 143 46.9
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 1.5e-27 127.5 136 48.5
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 1.5e-27 127.5 136 48.5
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 5.1e-20 102.4 140 42.1
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 2.2e-15 87.0 292 25.3
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 4.6e-13 79.3 75 49.3
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 1.1e-11 74.7 90 43.3
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 9.0e-09 65.1 67 47.8
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 9.9e-08 61.6 53 58.5
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 1.9e-06 57.4 67 44.8


User provided reference genes

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