Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.3e-58 228.8 122 100.0
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 8.9e-55 216.9 122 93.4
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 4.6e-51 204.5 122 91.8
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.3e-50 203.0 122 90.2
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 4.0e-47 191.4 121 84.3
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 4.0e-47 191.4 121 84.3
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 6.8e-47 190.7 121 83.5
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 6.8e-47 190.7 121 83.5
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 4.4e-46 188.0 122 85.2
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.4e-44 182.2 119 84.9
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 9.2e-44 180.3 120 81.7
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 1.6e-43 179.5 127 80.3
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 2.7e-43 178.7 121 81.8
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 2.7e-43 178.7 121 81.8
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 1.7e-42 176.0 120 79.2
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 1.7e-42 176.0 120 79.2
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 1.7e-42 176.0 120 79.2
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 3.6e-24 115.2 127 57.5
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 8.1e-24 114.0 127 56.7
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 5.3e-23 111.3 127 55.9
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 5.3e-23 111.3 127 55.9
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 5.3e-23 111.3 127 55.9
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 2.6e-22 109.0 122 59.0
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 2.2e-21 105.9 128 53.9
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 3.8e-21 105.1 119 55.5
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 6.4e-21 104.4 128 56.2
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.7e-19 99.0 124 54.0
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 3.5e-19 98.6 122 52.5
BcaB01g01833 Brassica carinata HOM05D009543 ORTHO05D004666 8.7e-18 94.0 122 51.6
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 6.2e-16 87.8 71 62.0
BcaB05g23718 Brassica carinata HOM05D008153 ORTHO05D004666 3.2e-12 75.5 47 80.9
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.3e-10 70.1 118 36.4
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.3e-10 69.3 118 39.0
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 2.3e-10 69.3 116 39.7
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 6.7e-10 67.8 78 47.4
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.1e-09 67.0 107 39.3
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.9e-09 66.2 127 39.4
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 2.5e-09 65.9 126 36.5
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 2.5e-09 65.9 118 35.6
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 3.3e-09 65.5 75 48.0
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 5.6e-09 64.7 121 38.0
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.4e-09 64.3 69 53.6
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.3e-08 63.5 76 48.7
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.6e-08 63.2 127 37.8
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 1.6e-08 63.2 115 38.3
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.6e-08 63.2 124 35.5
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 1.6e-08 63.2 77 51.9
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 2.1e-08 62.8 117 36.8
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.8e-08 62.4 78 44.9
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 2.8e-08 62.4 68 47.1
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 4.8e-08 61.6 69 47.8
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.8e-08 61.6 76 46.1
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 4.8e-08 61.6 76 46.1
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 4.8e-08 61.6 113 34.5
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 4.8e-08 61.6 69 49.3
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 8.1e-08 60.8 78 46.2
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 8.1e-08 60.8 77 46.8
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 8.1e-08 60.8 70 45.7
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.1e-07 60.5 78 46.2
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.4e-07 60.1 78 43.6
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.8e-07 59.7 117 36.8
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.8e-07 59.7 111 36.9
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 2.4e-07 59.3 106 41.5
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.4e-07 59.3 78 42.3
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.4e-07 59.3 69 52.2
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.4e-07 59.3 69 47.8
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 2.4e-07 59.3 78 46.2
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.4e-07 59.3 96 38.5
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 3.1e-07 58.9 75 42.7
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 3.1e-07 58.9 75 45.3
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 3.1e-07 58.9 114 35.1
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 3.1e-07 58.9 69 47.8
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 3.1e-07 58.9 69 47.8
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 4.0e-07 58.5 115 40.0
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.0e-07 58.5 102 39.2
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 5.3e-07 58.2 81 43.2
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.3e-07 58.2 107 39.3
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.3e-07 58.2 107 39.3
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.3e-07 58.2 108 37.0
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 5.3e-07 58.2 78 42.3
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 6.9e-07 57.8 122 35.2
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 6.9e-07 57.8 69 47.8
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 6.9e-07 57.8 119 35.3
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 6.9e-07 57.8 94 38.3
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.2e-06 57.0 112 36.6
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 2.0e-06 56.2 97 42.3
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 2.0e-06 56.2 78 44.9
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.0e-06 56.2 123 34.1
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.6e-06 55.8 74 40.5
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.6e-06 55.8 78 43.6
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 2.6e-06 55.8 78 43.6
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 2.6e-06 55.8 78 43.6
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 3.4e-06 55.5 67 43.3
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 3.4e-06 55.5 73 41.1
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 3.4e-06 55.5 124 33.9
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 3.4e-06 55.5 124 33.9
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.5e-06 55.1 107 38.3
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 4.5e-06 55.1 98 32.7
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 5.8e-06 54.7 69 43.5
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 5.8e-06 54.7 77 40.3
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 5.8e-06 54.7 120 32.5
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 7.6e-06 54.3 91 39.6
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 7.6e-06 54.3 126 31.0
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 1.0e-05 53.9 67 44.8
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.0e-05 53.9 99 35.4
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.0e-05 53.9 121 37.2


User provided reference genes

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