Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 4.0e-260 901.0 482 100.0
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 3.5e-155 552.4 605 56.9
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 3.0e-154 549.3 595 58.5
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 3.4e-150 535.8 610 57.0
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 3.3e-145 519.2 567 57.5
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 4.0e-143 512.3 602 55.8
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 5.3e-143 511.9 607 54.7
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.9e-140 503.4 613 53.0
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 3.9e-138 495.7 607 53.4
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 1.5e-137 493.8 610 51.6
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 2.5e-137 493.0 604 53.1
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 5.8e-134 481.9 607 51.2
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 2.5e-124 449.9 610 49.2
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 2.8e-112 409.8 568 49.1
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.0e-98 364.8 418 51.2
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 1.2e-89 334.7 653 38.1
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.8e-87 327.4 569 42.2
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 4.1e-87 326.2 652 38.0
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 7.0e-87 325.5 636 38.2
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.6e-86 324.3 648 39.2
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 3.8e-85 319.7 644 38.8
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 4.2e-84 316.2 600 41.3
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 5.5e-84 315.8 641 38.1
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 4.7e-83 312.8 645 38.4
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 1.5e-81 307.8 651 37.3
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 4.9e-80 302.8 659 36.1
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 1.4e-79 301.2 577 40.6
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 4.1e-79 299.7 564 39.9
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 3.5e-78 296.6 642 36.3
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 7.8e-78 295.4 626 37.5
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.5e-76 291.2 659 34.4
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 1.9e-76 290.8 587 36.3
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 2.5e-76 290.4 589 36.2
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 3.3e-76 290.0 654 34.1
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 7.3e-76 288.9 597 35.3
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 1.6e-75 287.7 572 36.5
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 2.8e-75 287.0 583 37.0
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 3.6e-75 286.6 573 36.5
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 6.1e-75 285.8 609 34.8
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 8.0e-75 285.4 547 37.1
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 1.8e-74 284.3 573 36.3
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 6.8e-74 282.3 568 40.0
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 3.4e-73 280.0 561 37.3
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.4e-73 279.6 588 36.6
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 3.7e-72 276.6 561 37.1
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 6.4e-72 275.8 588 36.2
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 8.3e-72 275.4 588 36.2
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 8.3e-72 275.4 618 35.3
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 5.4e-71 272.7 568 35.2
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 1.6e-70 271.2 641 34.9
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 1.7e-69 267.7 604 34.3
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 8.6e-69 265.4 585 35.2
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.1e-68 265.0 614 34.7
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 1.9e-68 264.2 533 35.6
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 5.6e-68 262.7 578 36.5
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 9.5e-68 261.9 644 33.2
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 1.2e-67 261.5 628 35.7
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 1.6e-67 261.2 565 36.6
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 4.7e-67 259.6 566 35.9
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.4e-66 258.1 601 33.8
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 1.8e-66 257.7 569 35.7
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 1.2e-65 255.0 626 33.1
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 1.2e-65 255.0 560 36.8
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 1.2e-65 255.0 528 38.8
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 1.2e-65 255.0 551 33.9
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 1.5e-65 254.6 632 34.0
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 6.4e-64 249.2 639 32.7
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.9e-63 247.7 575 34.4
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 2.7e-62 243.8 197 71.1
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 6.0e-62 242.7 541 37.0
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 7.8e-62 242.3 658 31.9
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 7.8e-62 242.3 591 36.5
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 3.0e-61 240.4 533 35.3
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 3.3e-60 236.9 568 32.9
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 5.6e-60 236.1 516 35.5
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 1.6e-59 234.6 566 34.1
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 4.7e-59 233.0 599 33.7
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 4.7e-59 233.0 591 34.5
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 1.8e-58 231.1 612 32.4
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 3.1e-58 230.3 608 32.4
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 1.7e-56 224.6 566 32.9
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.4e-55 220.7 603 33.5
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 9.2e-55 218.8 482 34.9
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 1.6e-54 218.0 634 30.9
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 2.7e-54 217.2 638 33.1
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.7e-53 214.5 129 81.4
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 5.1e-53 213.0 596 32.6
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 5.6e-52 209.5 258 48.1
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 6.2e-51 206.1 685 29.1
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 2.4e-50 204.1 423 34.3
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 8.9e-50 202.2 582 32.1
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 1.2e-49 201.8 554 31.0
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 1.6e-46 191.4 479 34.4
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 6.0e-46 189.5 519 32.0
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 8.7e-45 185.7 459 34.0
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 2.5e-44 184.1 561 31.4
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 2.5e-44 184.1 273 39.9
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 9.6e-44 182.2 610 30.2
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 4.8e-43 179.9 273 39.2
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 6.2e-43 179.5 490 31.6
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 1.1e-39 168.7 251 45.0
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 1.9e-39 167.9 313 34.5
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 7.9e-38 162.5 384 38.3
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 1.7e-37 161.4 366 33.6
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.1e-36 158.7 211 41.2
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 5.6e-36 156.4 277 37.2
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 7.3e-36 156.0 452 31.9
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 2.8e-35 154.1 213 42.7
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.6e-35 153.7 185 48.1
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.1e-34 150.6 500 26.6
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 4.0e-34 150.2 220 42.7
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.2e-31 140.6 282 35.8
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 3.2e-31 140.6 194 51.0
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 2.3e-29 134.4 514 26.8
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 1.1e-28 132.1 190 47.4
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 2.5e-28 131.0 275 42.9
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 3.3e-28 130.6 245 40.0
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 7.4e-28 129.4 238 41.6
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.3e-27 128.6 264 33.3
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 8.1e-27 125.9 179 49.2
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 8.1e-27 125.9 199 46.7
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 8.1e-27 125.9 179 49.2
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 6.9e-26 122.9 251 32.7
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 9.0e-26 122.5 215 36.3
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 1.0e-24 119.0 175 46.3
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 2.5e-23 114.4 147 55.8
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.5e-23 114.4 229 38.0
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 3.5e-22 110.5 233 34.3
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 3.5e-22 110.5 455 25.5
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.0e-21 109.0 229 37.6
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 3.0e-21 107.5 159 47.8
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 8.7e-21 105.9 557 26.2
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 9.6e-20 102.4 224 36.2
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.6e-19 101.7 304 35.5
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 6.2e-19 99.8 234 30.3
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 2.4e-18 97.8 132 41.7
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 3.1e-18 97.4 176 39.2
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 6.9e-18 96.3 151 39.7
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.1e-15 89.0 136 39.7
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.1e-15 89.0 132 43.9
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 1.4e-15 88.6 146 45.2
C02p46270 Brassica napus HOM05D003570 ORTHO05D027618 3.2e-15 87.4 188 39.9
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.6e-14 85.1 110 49.1
A02p29200 Brassica napus HOM05D003570 ORTHO05D027618 1.6e-14 85.1 201 39.8
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 2.1e-14 84.7 122 42.6
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.7e-14 84.3 130 42.3
BraA02t07950Z Brassica rapa HOM05D003570 ORTHO05D027618 2.7e-14 84.3 201 39.8
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.3e-13 82.0 122 41.0
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 1.8e-13 81.6 58 74.1
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 2.3e-13 81.3 152 38.2
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 3.0e-13 80.9 241 30.7
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 5.1e-13 80.1 231 30.7
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 1.1e-12 79.0 125 36.0
C03p39130 Brassica napus HOM05D003570 ORTHO05D004207 5.7e-12 76.6 91 53.8
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 7.4e-12 76.3 286 29.0
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 1.1e-10 72.4 255 25.1
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 3.1e-10 70.9 135 30.4
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 1.7e-08 65.1 177 31.6
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 6.5e-08 63.2 60 55.0
C07p30160 Brassica napus HOM05D003570 ORTHO05D004207 3.2e-07 60.8 71 46.5
BcaC03g16752 Brassica carinata HOM05D003570 ORTHO05D027618 7.2e-07 59.7 187 31.6
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.2e-06 58.9 60 43.3
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 2.1e-06 58.2 112 34.8


User provided reference genes

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