Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 5.3e-262 907.1 457 100.0
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 4.9e-207 724.5 464 82.5
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 1.0e-188 663.7 473 74.8
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 1.8e-180 636.3 470 72.6
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.9e-171 606.3 475 69.5
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.6e-170 603.2 471 69.9
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 2.0e-155 553.1 464 64.9
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 1.4e-153 547.0 450 69.3
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 4.5e-152 542.0 463 67.8
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 1.1e-150 537.3 475 66.7
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 2.5e-150 536.2 467 66.8
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 2.5e-150 536.2 467 66.8
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 2.5e-150 536.2 467 66.8
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 9.8e-115 417.9 470 51.9
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 1.2e-75 288.1 456 41.7
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 5.1e-71 272.7 460 40.2
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 1.1e-70 271.6 454 41.4
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.9e-70 270.8 463 40.0
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 3.3e-70 270.0 463 39.5
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 2.1e-69 267.3 483 38.1
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 1.1e-68 265.0 468 40.2
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 3.1e-68 263.5 474 38.6
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 9.0e-68 261.9 445 41.1
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.2e-67 261.5 445 41.1
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 2.0e-67 260.8 460 40.0
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 2.0e-67 260.8 456 39.9
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 2.6e-67 260.4 454 39.2
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 3.4e-67 260.0 468 39.1
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 4.9e-66 256.1 457 39.8
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 6.5e-66 255.8 478 37.4
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 1.1e-65 255.0 457 39.6
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 1.9e-65 254.2 446 39.5
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 5.5e-65 252.7 460 39.6
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.2e-64 251.5 449 39.2
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 1.3e-63 248.1 437 39.1
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 3.9e-63 246.5 448 38.8
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 2.5e-62 243.8 455 37.8
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 4.3e-62 243.0 456 38.4
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 6.3e-61 239.2 438 39.5
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 1.1e-60 238.4 459 37.3
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 1.4e-60 238.0 453 38.0
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 4.1e-60 236.5 476 39.1
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 9.0e-60 235.3 459 37.0
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 3.4e-59 233.4 457 38.7
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 5.9e-59 232.6 437 38.0
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 8.5e-58 228.8 472 37.5
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 1.9e-57 227.6 482 35.9
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 2.5e-57 227.3 458 37.3
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 9.4e-57 225.3 459 36.8
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 9.4e-57 225.3 448 37.9
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 9.4e-57 225.3 454 37.4
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 7.9e-56 222.2 454 36.1
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 7.9e-56 222.2 454 36.1
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 1.0e-55 221.9 454 41.0
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 8.8e-55 218.8 457 35.9
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 2.5e-54 217.2 461 35.8
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 3.3e-54 216.9 487 35.9
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 2.2e-53 214.2 467 36.2
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 6.3e-53 212.6 468 35.5
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 1.1e-52 211.8 465 36.1
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 4.1e-52 209.9 464 35.8
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 6.9e-52 209.1 445 37.3
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 6.9e-52 209.1 469 34.8
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 6.9e-52 209.1 488 36.9
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 1.2e-51 208.4 453 36.4
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 2.6e-51 207.2 482 34.0
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 5.9e-51 206.1 472 36.7
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 1.0e-50 205.3 449 36.3
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 2.2e-50 204.1 491 34.0
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 2.9e-50 203.8 439 34.9
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 5.0e-50 203.0 418 34.7
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 6.5e-50 202.6 466 35.2
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 1.1e-49 201.8 456 34.0
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 1.1e-49 201.8 424 35.6
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 3.2e-49 200.3 495 35.8
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 2.1e-48 197.6 485 35.3
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 4.7e-48 196.4 489 34.8
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 6.1e-48 196.1 475 34.3
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 7.9e-48 195.7 394 36.0
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 1.4e-47 194.9 486 35.2
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 3.9e-47 193.4 451 35.3
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 5.7e-46 189.5 447 34.5
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 7.0e-44 182.6 430 33.5
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 2.0e-43 181.0 461 34.5
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 4.5e-43 179.9 429 35.2
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 1.7e-42 177.9 490 34.7
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 2.2e-42 177.6 441 36.1
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 5.0e-42 176.4 462 34.4
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 6.5e-42 176.0 464 34.3
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 8.5e-42 175.6 450 34.4
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 1.1e-41 175.3 462 33.8
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.4e-41 174.9 453 34.2
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 1.9e-41 174.5 453 35.1
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 2.5e-41 174.1 452 31.9
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 9.4e-41 172.2 453 34.7
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.6e-40 171.4 459 33.1
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 1.0e-39 168.7 437 36.4
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 5.2e-39 166.4 449 34.3
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.0e-38 164.5 454 32.8
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 7.0e-36 156.0 427 31.4
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 9.1e-36 155.6 350 35.1
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 2.6e-35 154.1 429 31.2
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.2e-33 146.7 455 31.4
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 4.7e-32 143.3 439 28.5
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 3.8e-26 123.6 230 37.8
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 3.6e-24 117.1 362 30.9
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 4.0e-23 113.6 491 28.1
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 5.7e-22 109.8 286 33.9
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 2.9e-18 97.4 309 33.7
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 6.6e-18 96.3 328 31.4
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 5.5e-17 93.2 309 33.3
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 5.5e-17 93.2 201 36.8
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.2e-14 85.5 223 29.6
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 4.9e-13 80.1 205 33.2
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 1.8e-12 78.2 144 41.7
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.3e-07 61.2 165 31.5
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.5e-06 58.5 84 38.1


User provided reference genes

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