Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1389.8 746 100.0
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1139.4 778 80.6
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1134.0 778 79.4
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1133.2 776 78.4
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1127.9 778 76.7
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1126.3 778 78.0
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1122.8 778 80.2
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1119.0 778 78.4
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1109.4 784 77.7
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1109.4 778 78.3
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1106.3 778 79.0
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1102.8 748 77.5
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1096.3 772 79.3
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1087.0 778 77.6
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.1e-310 1067.4 740 79.2
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.1e-307 1059.7 778 75.8
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 9.8e-306 1053.1 778 75.6
AL5G19630 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 8.3e-297 1023.5 749 75.6
AL77U10020 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.8e-233 812.0 778 60.2
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.1e-227 793.9 956 52.8
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 7.7e-226 787.7 785 60.4
AL8G10170 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.1e-166 591.3 419 74.0
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 9.9e-165 584.7 325 88.6
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.2e-156 557.0 434 69.6
AT3G43148 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.3e-152 543.1 749 48.5
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.1e-134 483.4 701 46.1
AT2G11010 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.8e-127 459.5 673 46.2
AT4G06688 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 8.6e-92 342.4 678 38.2
AL8G10150 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 2.5e-91 340.9 251 78.5
AT5G35604 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.3e-75 287.0 301 55.1
AT1G36100 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.0e-65 253.8 162 78.4
AT3G32190 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 8.4e-55 219.5 302 49.7
AL4G17450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 8.7e-52 209.5 314 43.0
AT5G33806 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.7e-42 177.6 229 47.6
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.2e-40 172.6 218 38.1
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 8.2e-34 149.8 674 26.0
AT3G33393 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.4e-33 148.3 98 71.4
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 1.2e-32 146.0 667 25.0
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 2.6e-32 144.8 700 26.4
CARHR184520 Cardamine hirsuta HOM05D008458 ORTHO05D010628 6.5e-31 140.2 188 38.3
AT3G33293 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.1e-29 135.2 93 74.2
AT3G32150 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.3e-28 132.5 214 45.3
CARHR174650 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.9e-27 128.6 143 43.4
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 4.3e-27 127.5 646 24.6
CARHR035710 Cardamine hirsuta HOM05D008458 ORTHO05D010628 9.7e-27 126.3 175 36.0
CARHR053560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.1e-26 125.2 153 43.8
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 1.1e-25 122.9 192 37.0
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.4e-25 122.5 403 27.0
Carub.0002s1048 Capsella rubella HOM05D009492 ORTHO05D011693 2.0e-24 118.6 218 34.9
Carub.0004s0672 Capsella rubella HOM05D009492 ORTHO05D011693 2.9e-23 114.8 660 24.5
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-22 112.8 218 34.4
CARHR118560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.1e-22 112.8 122 49.2
AT4G08097 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.9e-22 112.1 111 56.8
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 3.2e-22 111.3 513 24.8
BcaC08g42951 Brassica carinata HOM05D006121 ORTHO05D009559 4.2e-22 110.9 204 31.4
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 9.3e-22 109.8 447 26.8
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 6.1e-21 107.1 685 25.1
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 6.1e-21 107.1 164 37.8
BcaC09g49745 Brassica carinata HOM05D006121 ORTHO05D009559 7.9e-21 106.7 173 32.4
BcaC03g16521 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-20 105.5 177 32.2
BcaC05g27675 Brassica carinata HOM05D006121 ORTHO05D009559 3.0e-20 104.8 204 28.4
BcaC07g37147 Brassica carinata HOM05D006121 ORTHO05D009559 3.0e-20 104.8 207 28.0
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 1.5e-19 102.4 234 29.9
Carub.0003s2742 Capsella rubella HOM05D009492 ORTHO05D011693 1.5e-19 102.4 175 34.3
AT3G32200 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.9e-19 102.1 137 48.2
BcaC01g02132 Brassica carinata HOM05D006121 ORTHO05D009559 2.5e-19 101.7 207 27.5
Carub.0001s3424 Capsella rubella HOM05D009492 ORTHO05D011693 1.3e-18 99.4 405 27.7
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 1.6e-18 99.0 142 37.3
BcaC09g49729 Brassica carinata HOM05D006121 ORTHO05D009559 2.2e-18 98.6 130 37.7
Carub.0007s3212 Capsella rubella HOM05D009492 ORTHO05D011693 2.2e-18 98.6 646 24.0
BcaC04g21502 Brassica carinata HOM05D006121 ORTHO05D009559 3.7e-18 97.8 173 30.6
Carub.0004s1788 Capsella rubella HOM05D009492 ORTHO05D011693 8.2e-18 96.7 485 26.6
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 1.4e-17 95.9 697 21.2
CARHR105800 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.4e-17 95.9 122 38.5
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 6.9e-17 93.6 727 23.0
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 9.1e-17 93.2 186 32.3
Carub.0007s2123 Capsella rubella HOM05D010629 ORTHO05D005680 9.1e-17 93.2 217 30.9
AT2G15420 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 1.2e-16 92.8 174 31.6
BcaC01g06835 Brassica carinata HOM05D006121 ORTHO05D009559 2.6e-16 91.7 159 30.8
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-16 91.3 208 28.8
Carub.0002s1244 Capsella rubella HOM05D010629 ORTHO05D005680 3.4e-16 91.3 212 29.7
BcaC02g11248 Brassica carinata HOM05D006121 ORTHO05D009559 4.5e-16 90.9 156 29.5
Carub.0005s0210 Capsella rubella HOM05D010629 ORTHO05D005680 7.7e-16 90.1 217 30.4
Carub.0353s0001 Capsella rubella HOM05D010629 ORTHO05D005680 7.7e-16 90.1 204 31.4
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-15 89.0 207 30.0
BcaC09g49299 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-15 89.0 159 29.6
Carub.0108s0001 Capsella rubella HOM05D016834 ORTHO05D016863 2.9e-15 88.2 254 26.8
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 6.5e-15 87.0 208 28.8
Carub.0003s2394 Capsella rubella HOM05D016834 ORTHO05D016863 1.4e-14 85.9 284 26.4
Carub.0006s0276 Capsella rubella HOM05D010629 ORTHO05D005680 1.4e-14 85.9 239 29.3
Carub.0008s1221 Capsella rubella HOM05D016834 ORTHO05D016863 2.5e-14 85.1 254 26.0
AL3G15920 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 3.2e-14 84.7 257 25.3
BcaC03g17371 Brassica carinata HOM05D006121 ORTHO05D009559 4.2e-14 84.3 156 30.8
Carub.0003s2886 Capsella rubella HOM05D016834 ORTHO05D016863 4.2e-14 84.3 284 26.1
CARHR289250 Cardamine hirsuta HOM05D020629 ORTHO05D022218 9.4e-14 83.2 348 25.9
AL7G45790 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.6e-13 82.4 179 26.8
CARHR181090 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.1e-13 82.0 90 44.4
Carub.0003s2830 Capsella rubella HOM05D009492 ORTHO05D011693 2.7e-13 81.6 503 24.3
Carub.0007s3091 Capsella rubella HOM05D016834 ORTHO05D016863 2.7e-13 81.6 287 26.5
BcaC05g27433 Brassica carinata HOM05D006121 ORTHO05D009559 3.6e-13 81.3 120 35.0
AL3G43600 Arabidopsis lyrata HOM05D010629 ORTHO05D005680 6.1e-13 80.5 174 27.0
AT1G46696 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 6.1e-13 80.5 190 28.9
Carub.0073s0002 Capsella rubella HOM05D016834 ORTHO05D016863 7.9e-13 80.1 217 28.1
AT1G20400 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 1.5e-11 75.9 344 24.1
Carub.0002s1012 Capsella rubella HOM05D010629 ORTHO05D005680 4.4e-11 74.3 196 29.6
AT3G42060 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 7.4e-11 73.6 186 25.3
Carub.0003s2807 Capsella rubella HOM05D010629 ORTHO05D005680 9.7e-11 73.2 167 25.1
Carub.0006s2612 Capsella rubella HOM05D016834 ORTHO05D016863 9.7e-11 73.2 200 27.0
AL1G53160 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.3e-10 72.8 386 23.3
Carub.0072s0001 Capsella rubella HOM05D010629 ORTHO05D005680 1.3e-10 72.8 167 25.7
BcaC08g43200 Brassica carinata HOM05D002078 ORTHO05D005680 2.2e-10 72.0 144 33.3
BolC8t48644H Brassica oleracea HOM05D002078 ORTHO05D005680 2.2e-10 72.0 209 26.8
CARHR153510 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.2e-10 72.0 66 47.0
Carub.0007s3050 Capsella rubella HOM05D010629 ORTHO05D005680 2.8e-10 71.6 167 25.1
BcaC02g11611 Brassica carinata HOM05D002078 ORTHO05D005680 3.7e-10 71.2 224 27.2
Carub.0005s0837 Capsella rubella HOM05D010629 ORTHO05D005680 3.7e-10 71.2 206 26.7
Carub.0009s0003 Capsella rubella HOM05D016834 ORTHO05D016863 3.7e-10 71.2 258 25.2
CARHR150680 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.7e-10 71.2 63 54.0
BcaC03g16371 Brassica carinata HOM05D006121 ORTHO05D009559 4.8e-10 70.9 176 27.8
CARHR217200 Cardamine hirsuta HOM05D020629 ORTHO05D022218 4.8e-10 70.9 342 26.3
Carub.0004s1088 Capsella rubella HOM05D010629 ORTHO05D005680 8.2e-10 70.1 145 30.3
AT5G38190 Arabidopsis thaliana HOM05D034490 ORTHO05D019745 1.1e-09 69.7 213 26.8
BcaC07g37903 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-09 69.7 210 29.0
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.4e-09 69.3 255 23.9
BcaB07g33910 Brassica carinata HOM05D002078 ORTHO05D005680 2.4e-09 68.6 123 35.0
BcaC03g17686 Brassica carinata HOM05D002078 ORTHO05D005680 2.4e-09 68.6 123 31.7
BolC3t20163H Brassica oleracea HOM05D006121 ORTHO05D009559 4.1e-09 67.8 81 39.5
Carub.0006s2663 Capsella rubella HOM05D009492 ORTHO05D011693 5.3e-09 67.4 107 34.6
Carub.0008s0719 Capsella rubella HOM05D009492 ORTHO05D011693 5.3e-09 67.4 374 24.6
Sp7g11540 Schrenkiella parvula HOM05D010529 ORTHO05D012528 5.3e-09 67.4 174 28.7
AT1G32010 Arabidopsis thaliana HOM05D010629 ORTHO05D019745 6.9e-09 67.0 189 27.0
CSS0040956 Camellia sinensis var. sinensis HOM05D035337 ORTHO05D000116 9.1e-09 66.6 150 30.7
AL3G49830 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.2e-08 66.2 170 25.9
BcaC02g09767 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-08 66.2 197 25.9
BcaC01g04584 Brassica carinata HOM05D002078 ORTHO05D005680 2.0e-08 65.5 149 30.9
BcaC02g10131 Brassica carinata HOM05D002078 ORTHO05D005680 3.4e-08 64.7 209 26.3
BcaC02g10377 Brassica carinata HOM05D002078 ORTHO05D005680 4.5e-08 64.3 173 28.3
Thhalv10023163m.g Eutrema salsugineum HOM05D010629 ORTHO05D016863 5.9e-08 63.9 101 33.7
BcaB03g15586 Brassica carinata HOM05D002078 ORTHO05D005680 7.7e-08 63.5 172 29.1
BcaC09g49293 Brassica carinata HOM05D002078 ORTHO05D005680 7.7e-08 63.5 110 34.5
RcHm_v2.0_Chr2g0084191 Rosa chinensis HOM05D031301 ORTHO05D010628 7.7e-08 63.5 115 33.0
BcaC04g20801 Brassica carinata HOM05D002078 ORTHO05D005680 1.0e-07 63.2 123 31.7
BcaC09g50043 Brassica carinata HOM05D002078 ORTHO05D005680 1.0e-07 63.2 123 31.7
AL9U10150 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.3e-07 62.8 170 25.3
BcaC07g37265 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-07 62.4 103 34.0
BcaC07g37462 Brassica carinata HOM05D002078 ORTHO05D005680 2.2e-07 62.0 123 31.7
CARHR181790 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.2e-07 62.0 63 47.6
BcaC08g43580 Brassica carinata HOM05D006121 ORTHO05D009559 6.5e-07 60.5 117 26.5
BraA06t25464Z Brassica rapa HOM05D008596 ORTHO05D003268 8.5e-07 60.1 163 23.9
CARHR034160 Cardamine hirsuta HOM05D020629 ORTHO05D022218 1.1e-06 59.7 187 28.9
Sp6g07550 Schrenkiella parvula HOM05D010772 ORTHO05D005680 1.1e-06 59.7 101 29.7
BcaC06g35841 Brassica carinata HOM05D006121 ORTHO05D009559 1.4e-06 59.3 103 32.0
A08p08190 Brassica napus HOM05D008596 ORTHO05D003268 1.9e-06 58.9 249 22.9
CARHR104300 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.9e-06 58.9 70 38.6
CARHR218210 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.9e-06 58.9 65 41.5
CSS0037614 Camellia sinensis var. sinensis HOM05D010739 ORTHO05D012209 3.2e-06 58.2 132 30.3
CARHR183560 Cardamine hirsuta HOM05D020629 ORTHO05D022218 5.5e-06 57.4 157 28.7
BcaC03g16426 Brassica carinata HOM05D002078 ORTHO05D005680 7.2e-06 57.0 173 26.0
A01p26930 Brassica napus HOM05D008596 ORTHO05D003268 7.2e-06 57.0 162 22.2


User provided reference genes

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