Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 2.6e-228 795.0 394 100.0
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 4.4e-220 767.7 394 95.9
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 1.2e-217 759.6 394 94.7
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.0e-212 742.3 394 93.1
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 3.3e-212 741.5 394 92.6
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 1.1e-207 726.5 394 90.4
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 3.2e-207 724.9 394 90.4
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.2e-206 723.0 395 89.9
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.2e-206 723.0 395 89.9
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 4.7e-206 721.1 393 89.8
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 2.0e-204 715.7 394 89.6
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 2.0e-204 715.7 394 89.6
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 5.7e-204 714.1 388 89.9
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 6.3e-203 710.7 394 88.1
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 2.7e-193 678.7 394 85.5
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 3.5e-193 678.3 390 85.9
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.4e-189 666.4 402 81.6
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.8e-189 666.0 402 81.6
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 9.2e-186 653.7 414 78.5
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 4.0e-173 611.7 349 86.8
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 2.8e-158 562.4 392 70.4
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 7.6e-156 554.3 396 69.4
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.2e-155 552.7 384 69.3
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.9e-155 552.4 385 69.6
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.1e-154 550.4 385 69.4
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 1.9e-154 549.7 381 69.8
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 4.2e-154 548.5 390 69.2
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 1.7e-152 543.1 379 71.0
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 4.3e-151 538.5 388 67.3
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 4.3e-151 538.5 405 66.4
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.3e-150 537.0 384 68.8
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 1.6e-150 536.6 394 66.0
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 2.8e-150 535.8 405 65.7
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.6e-150 535.4 394 65.7
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.4e-149 533.5 394 65.7
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 1.8e-149 533.1 398 66.3
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.5e-148 530.0 394 65.5
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 3.4e-148 528.9 401 63.8
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.5e-148 528.5 384 66.7
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 5.8e-148 528.1 372 69.9
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 7.6e-148 527.7 388 66.2
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 9.9e-148 527.3 387 65.9
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 9.9e-148 527.3 400 65.5
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 1.3e-147 526.9 378 68.3
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.9e-147 525.8 384 66.1
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 1.4e-146 523.5 398 65.3
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 3.5e-145 518.8 386 66.8
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 4.6e-145 518.5 393 64.1
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.3e-144 516.2 383 65.8
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 3.0e-144 515.8 425 62.8
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 3.0e-144 515.8 373 67.8
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.9e-144 515.4 384 64.8
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 6.7e-144 514.6 376 67.0
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 1.5e-143 513.5 380 66.6
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 3.3e-143 512.3 398 65.6
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 3.3e-143 512.3 380 65.3
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 4.3e-143 511.9 371 66.0
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 5.6e-143 511.5 369 66.7
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 5.6e-143 511.5 378 65.9
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 5.6e-143 511.5 384 65.1
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 7.4e-143 511.1 371 66.0
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 1.6e-142 510.0 375 66.1
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 4.8e-142 508.4 373 66.8
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 4.8e-142 508.4 397 62.2
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 6.2e-142 508.1 375 66.4
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 6.2e-142 508.1 379 66.2
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 8.1e-142 507.7 401 62.1
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 8.1e-142 507.7 396 64.4
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 8.1e-142 507.7 384 64.8
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 8.1e-142 507.7 379 64.9
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 1.1e-141 507.3 379 65.2
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 1.1e-141 507.3 379 65.7
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 9.0e-141 504.2 370 66.2
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 1.2e-140 503.8 371 65.0
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.6e-140 502.7 367 65.9
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 3.4e-140 502.3 383 65.5
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 4.5e-140 501.9 379 64.4
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 4.5e-140 501.9 379 64.4
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 1.3e-139 500.4 377 64.5
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.3e-139 500.4 376 65.7
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.2e-139 499.6 376 65.4
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 2.9e-139 499.2 402 61.4
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 2.9e-139 499.2 379 63.3
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 4.9e-139 498.4 381 63.3
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 6.4e-139 498.0 376 63.8
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 8.4e-139 497.7 374 65.0
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 2.4e-138 496.1 376 64.1
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 6.0e-137 491.5 260 91.2
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 1.5e-135 486.9 373 63.8
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 3.3e-135 485.7 396 59.8
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 3.7e-134 482.3 388 62.9
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 1.2e-132 477.2 382 62.8
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 1.0e-131 474.2 441 55.3
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.2e-131 473.0 394 58.1
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 1.9e-130 469.9 368 60.6
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 1.9e-130 469.9 369 61.2
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 4.6e-129 465.3 267 85.4
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 1.0e-128 464.2 396 58.6
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 1.3e-128 463.8 385 59.7
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.8e-128 463.4 374 60.2
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.9e-127 459.9 379 60.4
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.8e-126 456.1 379 59.9
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 2.8e-126 456.1 240 90.4
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 4.8e-126 455.3 241 90.0
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 4.8e-126 455.3 356 62.1
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 9.0e-125 451.1 386 58.3
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 9.0e-125 451.1 386 58.3
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 1.0e-123 447.6 381 58.8
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.3e-123 447.2 392 58.4
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 3.9e-120 435.6 393 57.0
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 1.4e-117 427.2 381 55.6
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.0e-115 421.0 368 57.1
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.0e-112 411.0 380 53.9
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.8e-112 410.2 293 68.9
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 9.1e-109 397.9 376 53.2
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 1.2e-108 397.5 287 66.9
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 2.6e-108 396.4 378 52.1
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 2.6e-108 396.4 287 66.9
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 2.9e-107 392.9 619 39.3
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 8.5e-107 391.3 368 53.0
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 3.2e-106 389.4 380 50.5
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 3.9e-104 382.5 348 58.6
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 1.4e-101 374.0 363 49.6
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.1e-97 360.1 374 51.3
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 2.7e-97 359.8 380 52.1
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 1.3e-94 350.9 262 63.4
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 2.2e-91 340.1 256 62.1
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 2.9e-91 339.7 393 46.3
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.2e-87 327.8 241 64.7
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 2.6e-87 326.6 247 62.3
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 9.8e-87 324.7 257 65.0
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 1.4e-85 320.9 256 64.5
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 7.0e-85 318.5 276 59.1
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.6e-76 290.8 362 43.6
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 8.6e-75 285.0 192 66.1
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.1e-61 241.5 280 52.5
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 9.2e-61 238.4 157 70.7
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.5e-52 209.9 212 50.5
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 8.1e-49 198.7 204 53.4
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 5.4e-45 186.0 177 56.5
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.5e-42 177.9 132 61.4
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 5.3e-40 169.5 114 67.5
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 2.6e-39 167.2 90 85.6
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 3.2e-37 160.2 135 59.3
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 9.3e-37 158.7 404 33.2
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 2.1e-33 147.5 74 87.8
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.2e-31 141.7 363 31.1
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.6e-28 131.3 106 57.5
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 2.7e-28 130.6 93 75.3
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 7.9e-28 129.0 301 31.6
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 6.7e-27 125.9 93 72.0
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 7.4e-26 122.5 93 71.0
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 9.6e-26 122.1 173 41.6
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 5.1e-19 99.8 281 29.9
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 2.8e-17 94.0 52 84.6
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 2.4e-16 90.9 52 88.5
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 4.0e-16 90.1 90 53.3
PRCOL_00001266 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.2e-15 88.6 378 27.0
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 2.6e-15 87.4 55 81.8
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 2.0e-07 61.2 63 44.4


User provided reference genes

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