Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G46970 Arabidopsis lyrata HOM05D000001 ORTHO05D078992 1.2e-74 283.1 147 100.0
AL2G31150 Arabidopsis lyrata HOM05D000001 ORTHO05D007291 1.3e-65 253.1 143 93.0
AT1G71490 Arabidopsis thaliana HOM05D000001 ORTHO05D007291 6.9e-62 240.7 143 87.4
CARHR291190 Cardamine hirsuta HOM05D000001 ORTHO05D007291 1.2e-61 240.0 143 87.4
Thhalv10019500m.g Eutrema salsugineum HOM05D000001 ORTHO05D007291 3.3e-56 221.9 143 81.8
Sp5g26640 Schrenkiella parvula HOM05D000001 ORTHO05D007291 2.4e-54 215.7 143 79.7
Aa31LG4G9100 Aethionema arabicum HOM05D000001 ORTHO05D007291 6.9e-54 214.2 142 77.5
Carub.0002s1835 Capsella rubella HOM05D000001 ORTHO05D007291 2.6e-53 212.2 138 82.6
A07p30670 Brassica napus HOM05D000001 ORTHO05D007291 1.4e-51 206.5 143 78.3
C06p35540 Brassica napus HOM05D000001 ORTHO05D007291 3.2e-51 205.3 143 76.2
BolC6t38675H Brassica oleracea HOM05D000001 ORTHO05D007291 3.2e-51 205.3 143 76.2
BcaC08g45772 Brassica carinata HOM05D000001 ORTHO05D007291 1.2e-50 203.4 143 75.5
BraA07t30705Z Brassica rapa HOM05D000001 ORTHO05D007291 7.9e-50 200.7 143 75.5
BcaB03g15608 Brassica carinata HOM05D000001 ORTHO05D007291 1.7e-47 193.0 143 73.4
Aa31LG7G6820 Aethionema arabicum HOM05D000001 ORTHO05D007291 3.0e-41 172.2 139 69.1
Thhalv10009874m.g Eutrema salsugineum HOM05D000001 ORTHO05D007291 8.8e-41 170.6 140 65.0
Sp1g20310 Schrenkiella parvula HOM05D000001 ORTHO05D007291 4.8e-39 164.9 134 64.9
AL1G36370 Arabidopsis lyrata HOM05D000001 ORTHO05D007291 1.4e-38 163.3 138 62.3
AT1G22830 Arabidopsis thaliana HOM05D000001 ORTHO05D007291 2.4e-38 162.5 134 62.7
THA.LOC104809753 Tarenaya hassleriana HOM05D000001 ORTHO05D007291 7.0e-38 161.0 139 64.7
BcaNung06445 Brassica carinata HOM05D000001 ORTHO05D007291 2.6e-37 159.1 139 59.7
CARHR023180 Cardamine hirsuta HOM05D000001 ORTHO05D007291 4.5e-37 158.3 140 60.0
BcaNung06109 Brassica carinata HOM05D000001 ORTHO05D007291 7.7e-37 157.5 139 59.7
C05p21920 Brassica napus HOM05D000001 ORTHO05D007291 1.0e-36 157.1 139 60.4
BolC5t30887H Brassica oleracea HOM05D000001 ORTHO05D007291 2.2e-36 156.0 139 59.7
A09p41930 Brassica napus HOM05D000001 ORTHO05D007291 4.2e-35 151.8 139 59.0
BraA09t39681Z Brassica rapa HOM05D000001 ORTHO05D007291 4.2e-35 151.8 139 59.0
MD15G1404200 Malus domestica HOM05D000001 ORTHO05D007291 9.7e-32 140.6 142 53.5
MD04G1056500 Malus domestica HOM05D000001 ORTHO05D007291 1.3e-31 140.2 142 51.4
RcHm_v2.0_Chr7g0228861 Rosa chinensis HOM05D000001 ORTHO05D007291 1.3e-31 140.2 142 50.7
Prupe.1G551000 Prunus persica HOM05D000001 ORTHO05D007291 3.7e-31 138.7 142 54.2
GSVIVG01036393001 Vitis vinifera HOM05D000001 ORTHO05D007291 4.8e-31 138.3 142 52.8
Cfa008099 Carpinus fangiana HOM05D000001 ORTHO05D007291 8.2e-31 137.5 142 53.5
QL09p003665 Quercus lobata HOM05D000001 ORTHO05D007291 1.8e-30 136.3 142 51.4
FvH4_5g32370 Fragaria vesca HOM05D000001 ORTHO05D007291 3.1e-30 135.6 142 47.9
PGR042G3182 Punica granatum HOM05D000001 ORTHO05D007291 3.1e-30 135.6 142 50.0
Dinv09398 Davidia involucrata HOM05D000001 ORTHO05D007291 5.3e-30 134.8 142 50.7
Haze_04156 Corylus avellana HOM05D005214 ORTHO05D007291 7.0e-30 134.4 142 52.8
FAN18G2000 Fragaria x ananassa HOM05D000001 ORTHO05D007291 7.0e-30 134.4 142 47.9
COL.COLO4_09993 Corchorus olitorius HOM05D000001 ORTHO05D007291 9.1e-30 134.0 142 52.1
Thecc.07G155100 Theobroma cacao HOM05D000001 ORTHO05D007291 1.2e-29 133.7 142 50.0
FAN13G1209 Fragaria x ananassa HOM05D000001 ORTHO05D007291 2.7e-29 132.5 142 47.2
Potri.019G074700 Populus trichocarpa HOM05D000001 ORTHO05D007291 3.5e-29 132.1 142 50.7
Manes.18G119040 Manihot esculenta HOM05D000001 ORTHO05D007291 5.9e-29 131.3 142 50.0
Sabra15G0087600 Salix brachista HOM05D000001 ORTHO05D007291 5.9e-29 131.3 142 50.7
ClCG08G001140 Citrullus lanatus HOM05D000001 ORTHO05D007291 1.0e-28 130.6 143 47.6
Sabra15G0089700 Salix brachista HOM05D000001 ORTHO05D007291 2.2e-28 129.4 142 50.0
CSS0009452 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D007291 2.9e-28 129.0 139 48.9
Sabra19G0085400 Salix brachista HOM05D000001 ORTHO05D007291 2.9e-28 129.0 142 50.7
Actinidia28434 Actinidia chinensis HOM05D000001 ORTHO05D007291 8.5e-28 127.5 142 49.3
Cfa006618 Carpinus fangiana HOM05D000001 ORTHO05D007291 1.1e-27 127.1 129 53.5
Gorai.002G033300 Gossypium raimondii HOM05D000001 ORTHO05D007291 1.5e-27 126.7 138 47.1
SHI25039 Sapria himalayana HOM05D000001 ORTHO05D007291 1.5e-27 126.7 142 47.9
Gohir.D01G024800 Gossypium hirsutum HOM05D000001 ORTHO05D007291 1.9e-27 126.3 138 47.1
Nn5g27263 Nelumbo nucifera HOM05D000001 ORTHO05D007291 1.9e-27 126.3 138 50.7
Cpa.g.sc21.66 Carica papaya HOM05D000001 ORTHO05D007291 1.2e-26 123.6 142 45.1
Haze_13937 Corylus avellana HOM05D000001 ORTHO05D007291 2.1e-26 122.9 129 51.2
Sed0016377 Sechium edule HOM05D000001 ORTHO05D007291 8.0e-26 120.9 138 46.4
Sed0015819 Sechium edule HOM05D000001 ORTHO05D007291 2.3e-25 119.4 142 45.8
Carub.0001s2233 Capsella rubella HOM05D000001 ORTHO05D007291 3.0e-25 119.0 97 63.9
TWI18G0870 Tripterygium wilfordii HOM05D000001 ORTHO05D007291 1.2e-24 117.1 142 46.5
TAR633G0994 Trochodendron aralioides HOM05D000001 ORTHO05D007291 2.6e-24 115.9 142 47.2
CANSAT56G3776 Cannabis sativa HOM05D000001 ORTHO05D007291 3.4e-24 115.5 144 43.1
CAN.G1164.43 Capsicum annuum HOM05D000001 ORTHO05D007291 4.8e-23 111.7 142 43.0
TAR633G1106 Trochodendron aralioides HOM05D000001 ORTHO05D007291 4.8e-23 111.7 142 45.8
vmacro11957 Vaccinium macrocarpon HOM05D000001 ORTHO05D007291 4.8e-23 111.7 136 44.1
Sc05g0007170 Simmondsia chinensis HOM05D000001 ORTHO05D007291 3.1e-22 109.0 139 44.6
Nitab4.5_0006974g0030 Nicotiana tabacum HOM05D000001 ORTHO05D007291 5.4e-22 108.2 142 40.1
MELO3C022168.2 Cucumis melo HOM05D000001 ORTHO05D007291 1.2e-21 107.1 142 41.5
Nitab4.5_0005550g0070 Nicotiana tabacum HOM05D000001 ORTHO05D007291 1.6e-21 106.7 142 40.1
Oeu025720.1 Olea europaea HOM05D000001 ORTHO05D007291 2.0e-21 106.3 142 43.0
PGSC0003DMG400006056 Solanum tuberosum HOM05D000001 ORTHO05D007291 2.0e-21 106.3 142 40.1
SGA_v2.0_scaffold24G10421 Striga asiatica HOM05D000001 ORTHO05D007291 2.0e-21 106.3 144 44.4
Glyma.01G231500 Glycine max HOM05D000001 ORTHO05D007291 2.7e-21 105.9 142 40.8
Cc10_g09060 Coffea canephora HOM05D000001 ORTHO05D007291 3.5e-21 105.5 142 40.1
Atru.chr10.834 Acer truncatum HOM05D000001 ORTHO05D007291 4.5e-21 105.1 138 42.8
PGSC0003DMG400032270 Solanum tuberosum HOM05D000001 ORTHO05D007291 4.5e-21 105.1 142 40.1
Lalb_Chr05g0211411 Lupinus albus HOM05D000001 ORTHO05D007291 7.7e-21 104.4 142 40.8
Eucgr.F02971 Eucalyptus grandis HOM05D000001 ORTHO05D007291 1.0e-20 104.0 142 38.7
MSTRG.25329 Avicennia marina HOM05D000001 ORTHO05D007291 2.3e-20 102.8 142 38.7
Lsat_1_v5_gn_1_25101 Lactuca sativa HOM05D000001 ORTHO05D007291 2.3e-20 102.8 138 44.9
Solyc09g082400.2 Solanum lycopersicum HOM05D000001 ORTHO05D007291 5.0e-20 101.7 142 39.4
CsaV3_5G039890 Cucumis sativus L. HOM05D000001 ORTHO05D007291 6.6e-20 101.3 130 43.1
SGA_v2.0_scaffold24G10355 Striga asiatica HOM05D000001 ORTHO05D007291 6.6e-20 101.3 144 41.0
Sopen09g031280 Solanum pennellii HOM05D000001 ORTHO05D007291 8.6e-20 100.9 142 38.7
Atru.chr10.835 Acer truncatum HOM05D000001 ORTHO05D007291 1.5e-19 100.1 138 41.3
Lj2g0023155 Lotus japonicus HOM05D000001 ORTHO05D007291 1.5e-19 100.1 138 39.1
EL10Ac8g20605 Beta vulgaris HOM05D000001 ORTHO05D007291 1.9e-19 99.8 136 41.9
Glyma.10G012200 Glycine max HOM05D000001 ORTHO05D007291 2.5e-19 99.4 142 39.4
Rhsim12G0004900 Rhododendron simsii HOM05D000001 ORTHO05D007291 3.3e-19 99.0 136 40.4
Ca_25909_v3 Cicer arietinum L. HOM05D000001 ORTHO05D007291 7.2e-19 97.8 142 35.9
arahy.Tifrunner.gnm1.ann1.WRRX0R Arachis hypogaea HOM05D000001 ORTHO05D007291 9.5e-19 97.4 145 35.9
Ciclev10019278m.g Citrus clementina HOM05D000001 ORTHO05D007291 9.5e-19 97.4 136 38.2
MBI03_g28428_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 9.5e-19 97.4 135 40.0
Phvul.002G035600 Phaseolus vulgaris HOM05D000001 ORTHO05D007291 9.5e-19 97.4 145 39.3
AUR62031195 Chenopodium quinoa HOM05D000001 ORTHO05D007291 1.2e-18 97.1 129 42.6
Hund05298 Selenicereus undatus HOM05D000001 ORTHO05D007291 2.1e-18 96.3 138 37.0
TPR.G37865 Trifolium pratense HOM05D000001 ORTHO05D007291 4.7e-18 95.1 144 36.1
DCAR_015626 Daucus carota HOM05D000001 ORTHO05D007291 1.0e-17 94.0 142 39.4
VMungo1215G3090 Vigna mungo HOM05D000001 ORTHO05D007291 1.0e-17 94.0 142 38.0
Ca_08551_v3 Cicer arietinum L. HOM05D000001 ORTHO05D007291 1.4e-17 93.6 142 35.2
Duzib213G0304 Durio zibethinus HOM05D000001 ORTHO05D007291 2.3e-17 92.8 79 55.7
Duzib213G0751 Durio zibethinus HOM05D000001 ORTHO05D007291 2.3e-17 92.8 79 55.7
VMungo1309G1978 Vigna mungo HOM05D000001 ORTHO05D007291 2.3e-17 92.8 142 39.4
LjContig00222g0015782 Lotus japonicus HOM05D000001 ORTHO05D007291 6.8e-17 91.3 138 37.0
Migut.M00243 Erythranthe guttata HOM05D000001 ORTHO05D007291 1.2e-16 90.5 142 37.3
Medtr5g008690 Medicago truncatula HOM05D000001 ORTHO05D007291 1.2e-16 90.5 138 37.0
Ah.09g233620 Amaranthus hybridus HOM05D000001 ORTHO05D007291 1.5e-16 90.1 138 42.0
Migut.M00242 Erythranthe guttata HOM05D000001 ORTHO05D007291 1.5e-16 90.1 142 37.3
HanXRQChr03g0080601 Helianthus annuus HOM05D000001 ORTHO05D007291 2.0e-16 89.7 134 41.0
AUR62036602 Chenopodium quinoa HOM05D000001 ORTHO05D007291 3.4e-16 89.0 130 39.2
Migut.N01077 Erythranthe guttata HOM05D000001 ORTHO05D007291 1.3e-15 87.0 138 37.0
Migut.C01035 Erythranthe guttata HOM05D000001 ORTHO05D007291 1.4e-14 83.6 142 38.0
Gohir.A01G037500 Gossypium hirsutum HOM05D000001 ORTHO05D007291 2.7e-13 79.3 90 44.4
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 3.5e-13 79.0 139 38.1
Haze_04154 Corylus avellana HOM05D000001 ORTHO05D005861 5.9e-13 78.2 105 46.7
Peaxi162Scf00078g00320 Petunia axillaris HOM05D000001 ORTHO05D007291 1.9e-11 73.2 81 44.4
HPP92_004306 Vanilla planifolia HOM05D000001 ORTHO05D007291 4.3e-11 72.0 141 34.8
ATR1089G009 Amborella trichopoda HOM05D000001 ORTHO05D000003 9.8e-08 60.8 144 32.6
vmacro18885 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 1.7e-07 60.1 100 38.0
ATR0582G312 Amborella trichopoda HOM05D000001 ORTHO05D000003 1.4e-06 57.0 127 30.7
SGA_v2.0_scaffold120G32868 Striga asiatica HOM05D000001 ORTHO05D007291 1.4e-06 57.0 144 31.2
VMungo1080G1391 Vigna mungo HOM05D000001 ORTHO05D000003 1.9e-06 56.6 90 36.7
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 4.1e-06 55.5 124 34.7
Phvul.005G169000 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 4.1e-06 55.5 90 35.6
CSS0022819 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 5.4e-06 55.1 91 34.1
AUR62029191 Chenopodium quinoa HOM05D000001 ORTHO05D000003 7.0e-06 54.7 124 34.7
Glyma.15G016600 Glycine max HOM05D000001 ORTHO05D000003 7.0e-06 54.7 119 32.8


User provided reference genes

Program Settings