Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 3.6e-65 251.5 135 100.0
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 1.1e-29 133.7 95 82.1
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 1.7e-27 126.3 95 76.8
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 1.1e-26 123.6 94 76.6
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 1.9e-26 122.9 93 77.4
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 2.5e-26 122.5 117 67.5
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 5.6e-26 121.3 96 77.1
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 5.6e-26 121.3 96 77.1
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 2.8e-25 119.0 95 75.8
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 1.1e-24 117.1 89 78.7
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 2.2e-22 109.4 92 72.8
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 3.8e-22 108.6 100 69.0
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 1.0e-19 100.5 123 55.3
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 3.0e-19 99.0 98 63.3
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 1.7e-14 83.2 103 51.5
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 2.9e-14 82.4 118 49.2
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 8.4e-14 80.9 109 52.3
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 1.9e-13 79.7 100 54.0
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 4.2e-13 78.6 95 51.6
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.2e-13 78.6 95 51.6
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.2e-13 78.6 95 51.6
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.2e-13 78.6 95 51.6
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.2e-13 78.6 95 51.6
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 4.2e-13 78.6 100 52.0
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 5.5e-13 78.2 100 53.0
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 7.1e-13 77.8 95 53.7
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 7.1e-13 77.8 100 52.0
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 9.3e-13 77.4 96 54.2
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 1.2e-12 77.0 103 50.5
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 1.6e-12 76.6 100 52.0
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 1.6e-12 76.6 122 43.4
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 2.1e-12 76.3 95 52.6
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 2.7e-12 75.9 89 56.2
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 2.7e-12 75.9 90 53.3
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 2.7e-12 75.9 106 51.9
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 3.5e-12 75.5 111 45.9
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 3.5e-12 75.5 105 50.5
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 6.0e-12 74.7 102 49.0
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 1.3e-11 73.6 117 47.9
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 1.3e-11 73.6 91 51.6
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 1.3e-11 73.6 90 51.1
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 1.8e-11 73.2 105 47.6
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 2.3e-11 72.8 89 53.9
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 2.3e-11 72.8 91 53.8
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 3.0e-11 72.4 112 44.6
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 3.0e-11 72.4 120 44.2
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 3.0e-11 72.4 103 48.5
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 3.0e-11 72.4 91 49.5
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 3.0e-11 72.4 89 53.9
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 5.1e-11 71.6 87 56.3
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 5.1e-11 71.6 87 56.3
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 8.7e-11 70.9 93 50.5
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 8.7e-11 70.9 91 52.7
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 1.1e-10 70.5 104 48.1
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 1.9e-10 69.7 103 47.6
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 1.9e-10 69.7 101 49.5
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 1.9e-10 69.7 86 53.5
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 2.5e-10 69.3 121 44.6
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 3.3e-10 68.9 92 50.0
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 3.3e-10 68.9 73 58.9
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 7.4e-10 67.8 120 42.5
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 1.3e-09 67.0 100 46.0
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 1.6e-09 66.6 92 46.7
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 1.6e-09 66.6 118 43.2
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 3.7e-09 65.5 90 47.8
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 3.7e-09 65.5 105 48.6
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 4.8e-09 65.1 126 42.1
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 6.2e-09 64.7 100 46.0
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 8.2e-09 64.3 76 56.6
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 8.2e-09 64.3 89 48.3
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 1.8e-08 63.2 89 48.3
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 3.1e-08 62.4 94 45.7
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 4.0e-08 62.0 128 37.5
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 5.3e-08 61.6 107 43.0
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 2.6e-07 59.3 95 48.4
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 3.4e-07 58.9 95 48.4
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 3.4e-07 58.9 113 42.5
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 3.4e-07 58.9 107 42.1
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 4.5e-07 58.5 95 44.2
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 4.5e-07 58.5 108 44.4
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 4.5e-07 58.5 105 41.0
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 5.8e-07 58.2 107 42.1
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 7.6e-07 57.8 77 51.9
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 7.6e-07 57.8 103 42.7
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 1.0e-06 57.4 98 41.8
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 2.2e-06 56.2 114 39.5
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 2.2e-06 56.2 94 47.9
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 3.8e-06 55.5 113 41.6
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 4.9e-06 55.1 73 49.3


User provided reference genes

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