Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 4.2e-170 601.3 304 100.0
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 1.0e-155 553.5 304 95.4
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 4.5e-148 528.1 302 89.4
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 4.5e-148 528.1 302 90.4
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 7.4e-143 510.8 303 85.8
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 1.7e-139 499.6 309 85.8
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 3.9e-136 488.4 312 83.7
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 3.9e-136 488.4 312 83.7
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 5.1e-136 488.0 313 83.4
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 3.1e-125 452.2 302 77.2
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 3.6e-121 438.7 296 77.0
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 3.1e-117 425.6 264 79.2
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 7.0e-117 424.5 280 74.3
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 2.7e-116 422.5 294 72.4
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 3.5e-116 422.2 301 72.1
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 3.5e-116 422.2 267 76.4
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 6.5e-115 417.9 295 72.2
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 8.5e-115 417.5 301 71.1
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 1.1e-114 417.2 267 76.4
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.5e-114 416.0 267 76.4
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 3.2e-114 415.6 283 73.5
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 3.2e-114 415.6 283 73.5
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 9.4e-114 414.1 279 75.6
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 9.4e-114 414.1 270 75.6
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 2.7e-113 412.5 294 71.1
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 3.6e-113 412.1 265 80.8
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 3.6e-113 412.1 262 77.9
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 4.7e-113 411.8 295 70.5
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 8.0e-113 411.0 279 71.3
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 1.8e-112 409.8 264 76.1
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 2.3e-112 409.5 295 69.8
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 3.0e-112 409.1 295 70.5
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 3.0e-112 409.1 267 75.7
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 3.0e-112 409.1 269 74.3
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 4.0e-112 408.7 282 72.7
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 5.2e-112 408.3 267 74.9
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 1.2e-111 407.1 269 74.3
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.5e-111 406.8 263 72.6
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 2.6e-111 406.0 283 71.4
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 3.4e-111 405.6 263 73.8
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 3.4e-111 405.6 318 67.0
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 3.4e-111 405.6 269 74.7
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 4.4e-111 405.2 268 76.1
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 5.7e-111 404.8 294 69.0
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 5.7e-111 404.8 267 73.8
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 9.8e-111 404.1 269 75.5
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 9.8e-111 404.1 263 74.9
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.7e-110 403.3 318 66.7
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 3.7e-110 402.1 279 69.2
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 3.7e-110 402.1 263 73.8
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 6.3e-110 401.4 267 74.5
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.1e-109 400.6 263 74.1
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 1.4e-109 400.2 258 76.0
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 2.4e-109 399.4 262 74.0
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 3.1e-109 399.1 280 71.1
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 3.1e-109 399.1 270 74.4
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 4.1e-109 398.7 266 72.9
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 1.2e-108 397.1 268 72.4
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 3.5e-108 395.6 264 73.9
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 4.5e-108 395.2 263 73.0
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 5.9e-108 394.8 268 72.0
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.0e-107 394.0 267 72.3
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.9e-107 392.5 301 66.4
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.9e-107 392.5 301 66.4
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.9e-107 392.5 264 73.5
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 2.9e-107 392.5 263 70.3
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 3.8e-107 392.1 267 73.0
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 8.6e-107 391.0 267 71.9
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 8.6e-107 391.0 273 68.9
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.1e-106 390.6 268 71.3
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 4.2e-106 388.7 278 70.9
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 5.5e-106 388.3 263 72.2
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 7.2e-106 387.9 267 71.9
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 3.6e-105 385.6 288 66.7
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.4e-104 383.6 315 62.5
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 8.9e-104 380.9 238 78.6
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 8.9e-104 380.9 268 70.5
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 8.9e-104 380.9 268 70.5
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 2.2e-102 376.3 313 62.9
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 6.3e-102 374.8 287 66.9
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.8e-101 373.2 270 67.0
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 9.2e-101 370.9 268 66.8
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 9.2e-101 370.9 312 60.9
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 3.5e-100 369.0 260 67.7
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 1.0e-99 367.5 232 77.2
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 1.7e-99 366.7 273 64.5
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 5.0e-99 365.2 232 75.0
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.9e-98 363.2 230 76.1
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 2.5e-98 362.8 278 63.7
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.3e-98 362.5 262 67.2
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 7.3e-98 361.3 230 75.7
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 2.8e-97 359.4 229 74.7
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 6.1e-97 358.2 247 68.4
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 3.1e-96 355.9 277 67.1
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 8.9e-96 354.4 373 52.3
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.3e-94 350.5 262 64.5
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.0e-91 340.9 264 68.6
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 4.9e-86 322.0 195 77.4
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.3e-86 321.2 236 68.6
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 7.1e-85 318.2 200 85.5
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 2.5e-82 309.7 246 58.9
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 4.0e-80 302.4 249 56.6
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 5.8e-79 298.5 202 75.2
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 2.4e-77 293.1 249 58.2
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 4.6e-76 288.9 226 67.3
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 2.0e-71 273.5 194 71.6
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 3.4e-71 272.7 196 63.8
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 1.9e-69 266.9 208 72.1
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 4.2e-69 265.8 172 76.7
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 4.6e-68 262.3 174 79.9
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 6.6e-67 258.5 199 67.3
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 1.6e-65 253.8 200 68.0
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 6.2e-65 251.9 157 79.0
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 5.8e-63 245.4 231 62.3
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 9.9e-63 244.6 175 73.7
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 5.3e-56 222.2 130 82.3
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 4.5e-55 219.2 213 52.6
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.4e-47 193.0 157 66.2
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 5.8e-47 192.2 157 66.2
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-46 191.4 156 66.7
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 1.0e-46 191.4 142 74.6
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-46 190.7 157 66.2
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 4.9e-46 189.1 173 61.3
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-45 186.8 157 65.0
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.2e-45 186.0 156 65.4
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 4.2e-45 186.0 157 66.2
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.0e-43 181.4 122 67.2
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-43 180.6 158 62.7
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 2.6e-39 166.8 144 63.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-38 163.7 157 60.5
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 6.5e-38 162.2 98 82.7
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 4.6e-36 156.0 99 79.8
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 5.1e-35 152.5 173 54.9
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 6.7e-35 152.1 160 56.2
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 6.7e-35 152.1 160 56.2
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 8.7e-35 151.8 107 74.8
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-34 150.6 125 64.8
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-34 150.6 123 65.9
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 4.3e-34 149.4 94 81.9
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 8.2e-33 145.2 225 38.2
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.7e-30 137.5 88 71.6
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-28 131.0 165 51.5
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-26 124.0 109 61.5
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.5e-23 112.8 132 50.0
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 6.5e-22 109.0 70 80.0
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 6.5e-22 109.0 73 67.1
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-18 95.1 89 59.6
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.3e-17 94.7 56 78.6
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-17 94.4 96 55.2
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 8.2e-17 92.0 57 75.4
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 9.7e-10 68.6 110 39.1
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.8e-09 67.0 134 34.3
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 3.8e-06 56.6 43 62.8
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 8.5e-06 55.5 36 69.4


User provided reference genes

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