Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 6.2e-180 634.4 425 100.0
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 8.2e-148 527.7 427 81.7
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 4.5e-146 521.9 428 86.4
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 2.5e-144 516.2 428 76.6
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 5.1e-142 508.4 432 79.4
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 4.8e-140 501.9 454 72.2
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 1.8e-139 500.0 426 75.6
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 5.3e-139 498.4 454 75.3
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 1.4e-134 483.8 458 74.9
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 9.7e-133 477.6 427 71.9
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 1.3e-132 477.2 431 70.1
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 1.3e-132 477.2 431 70.1
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 1.2e-130 470.7 428 74.5
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 2.9e-129 466.1 431 76.1
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.1e-104 384.4 436 67.9
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 4.3e-104 382.5 364 68.1
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 3.6e-103 379.4 433 64.0
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 3.7e-100 369.4 444 56.3
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 6.8e-94 348.6 367 64.0
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 9.2e-83 311.6 430 47.7
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 8.6e-81 305.1 465 55.5
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.9e-80 303.9 437 44.6
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 3.6e-79 299.7 419 52.3
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 8.1e-79 298.5 454 60.8
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.4e-78 297.7 442 44.8
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 1.8e-78 297.4 496 55.0
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 3.1e-78 296.6 443 48.1
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 4.4e-77 292.7 441 44.7
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.3e-76 291.2 413 49.6
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 1.7e-76 290.8 459 60.1
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 3.8e-76 289.7 449 61.9
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 3.8e-76 289.7 429 45.2
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 4.9e-76 289.3 451 56.5
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 6.4e-76 288.9 441 44.0
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 6.4e-76 288.9 449 61.9
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 6.4e-76 288.9 439 44.6
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 1.4e-75 287.7 429 60.1
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 1.9e-75 287.3 439 45.3
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 2.4e-75 287.0 447 56.2
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 3.2e-75 286.6 438 44.3
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 5.4e-75 285.8 440 44.5
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 5.4e-75 285.8 440 62.0
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 7.1e-75 285.4 482 52.9
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 2.1e-74 283.9 395 45.8
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 2.7e-74 283.5 431 43.6
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 2.7e-74 283.5 434 44.0
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 4.6e-74 282.7 436 43.6
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.0e-73 281.6 460 59.3
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 1.0e-73 281.6 439 43.7
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.7e-73 280.8 467 60.4
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 2.3e-73 280.4 433 52.2
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 5.1e-73 279.3 397 45.3
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 6.6e-73 278.9 477 58.5
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 1.1e-72 278.1 440 43.4
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 1.1e-72 278.1 495 52.9
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 3.3e-72 276.6 479 56.2
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 7.3e-72 275.4 440 43.6
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 7.3e-72 275.4 404 45.8
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 9.6e-72 275.0 485 57.5
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.2e-71 274.6 412 58.5
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.6e-71 274.2 495 56.6
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.1e-71 273.9 421 42.3
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 2.8e-71 273.5 492 53.5
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 2.8e-71 273.5 439 42.8
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 4.7e-71 272.7 411 43.3
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 6.2e-71 272.3 446 48.7
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 8.1e-71 271.9 485 57.3
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 1.4e-70 271.2 440 60.2
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.8e-70 270.8 485 56.3
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 1.8e-70 270.8 493 51.5
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 3.1e-70 270.0 442 49.1
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 3.1e-70 270.0 426 43.4
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.3e-70 269.2 455 41.1
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 5.3e-70 269.2 438 41.6
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 4.4e-69 266.2 422 60.4
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 4.4e-69 266.2 402 43.0
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 4.4e-69 266.2 438 40.4
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 7.6e-69 265.4 482 55.8
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 1.3e-68 264.6 524 50.0
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 2.9e-68 263.5 478 40.6
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 3.8e-68 263.1 440 40.7
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 3.8e-68 263.1 443 51.9
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 8.4e-68 261.9 445 42.9
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 3.2e-67 260.0 439 41.5
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 9.3e-67 258.5 519 52.6
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 4.6e-66 256.1 421 59.6
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 2.3e-65 253.8 417 42.9
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 3.9e-65 253.1 396 49.0
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 6.6e-65 252.3 450 53.1
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 8.7e-65 251.9 509 52.5
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.5e-64 251.1 447 47.0
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.9e-64 250.8 476 56.5
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 2.5e-64 250.4 454 39.0
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 2.8e-63 246.9 448 54.2
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.8e-62 244.2 481 52.2
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 4.0e-62 243.0 373 44.0
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 9.0e-62 241.9 402 40.5
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 9.0e-62 241.9 440 37.0
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.2e-61 241.5 446 58.7
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 3.2e-59 233.4 478 39.7
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 7.1e-59 232.3 375 42.9
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 9.3e-59 231.9 384 42.4
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 1.6e-58 231.1 523 46.7
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 2.1e-58 230.7 406 39.4
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 6.0e-58 229.2 435 38.2
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 3.9e-57 226.5 472 48.9
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 5.1e-57 226.1 562 44.1
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 7.4e-56 222.2 509 49.1
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 1.6e-55 221.1 427 35.8
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 3.7e-55 219.9 396 36.9
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 1.4e-54 218.0 409 38.1
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 3.8e-52 209.9 566 44.9
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 1.4e-51 208.0 366 39.9
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.5e-50 203.4 174 62.6
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 4.6e-50 203.0 156 69.9
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.1e-48 198.4 425 50.1
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.1e-48 198.4 425 50.1
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.5e-48 198.0 141 72.3
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 6.2e-47 192.6 107 93.5
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 1.5e-40 171.4 391 42.7
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.7e-40 169.5 149 63.8
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 3.1e-38 163.7 133 66.2
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 3.9e-33 146.7 442 37.8
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 1.1e-32 145.2 157 53.5
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 2.9e-28 130.6 156 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 2.1e-26 124.4 376 33.2
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.0e-24 117.9 402 29.1
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 9.1e-22 109.0 147 45.6
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 2.3e-17 94.4 60 73.3
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 4.8e-15 86.7 55 65.5
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 9.1e-14 82.4 104 42.3
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 1.5e-11 75.1 64 53.1
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 1.5e-11 75.1 80 50.0
PRCOL_00001099 Prasinoderma coloniale HOM05D005805 ORTHO05D007226 4.1e-06 57.0 138 31.9


User provided reference genes

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