Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G46490 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 3.0e-231 805.1 478 100.0
AT4G11780 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 2.4e-204 715.7 478 88.5
CARHR254530 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.2e-171 607.1 480 73.8
Thhalv10028604m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 7.0e-164 581.3 500 74.2
Carub.0006s3089 Capsella rubella HOM05D002977 ORTHO05D003225 1.1e-161 573.9 503 74.6
BraA09t38300Z Brassica rapa HOM05D002977 ORTHO05D003225 4.4e-150 535.4 502 69.5
A09p27340 Brassica napus HOM05D002977 ORTHO05D003225 2.2e-149 533.1 501 71.9
BcaB05g23809 Brassica carinata HOM05D002977 ORTHO05D003225 3.7e-149 532.3 500 72.2
BcaB01g01677 Brassica carinata HOM05D002977 ORTHO05D003225 3.0e-146 522.7 486 72.0
C09p34660 Brassica napus HOM05D002977 ORTHO05D003225 5.1e-146 521.9 496 72.0
BolC9t56312H Brassica oleracea HOM05D002977 ORTHO05D003225 6.8e-143 511.5 512 69.7
A02p26000 Brassica napus HOM05D002977 ORTHO05D003225 1.7e-141 506.9 499 71.5
Sp6g05680 Schrenkiella parvula HOM05D002977 ORTHO05D003225 1.2e-139 500.7 497 68.6
BraA02t07599Z Brassica rapa HOM05D002977 ORTHO05D003225 5.1e-138 495.4 507 70.0
BcaC03g16329 Brassica carinata HOM05D002977 ORTHO05D003225 6.2e-136 488.4 499 69.7
C02p41490 Brassica napus HOM05D002977 ORTHO05D003225 6.2e-136 488.4 499 69.7
BolC2t10166H Brassica oleracea HOM05D002977 ORTHO05D003225 1.7e-122 443.7 524 64.1
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 1.1e-121 441.0 491 57.2
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 2.5e-97 360.1 503 51.3
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 3.3e-97 359.8 507 49.9
CARHR230080 Cardamine hirsuta HOM05D002977 ORTHO05D003225 8.5e-93 345.1 487 48.5
AT4G23020 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 2.6e-89 333.6 499 47.9
C01p17640 Brassica napus HOM05D002977 ORTHO05D003225 1.8e-87 327.4 508 46.7
A01p14320 Brassica napus HOM05D002977 ORTHO05D003225 4.1e-87 326.2 497 46.1
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 1.2e-86 324.7 512 51.2
BraA01t01377Z Brassica rapa HOM05D002977 ORTHO05D003225 4.2e-84 316.2 533 43.7
BcaC09g51034 Brassica carinata HOM05D002977 ORTHO05D003225 1.8e-82 310.8 503 45.7
AL7G30500 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 1.9e-76 290.8 514 43.2
Carub.0007s1825 Capsella rubella HOM05D002977 ORTHO05D003225 1.0e-74 285.0 505 44.0
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 3.2e-39 167.2 534 35.4
BcaB03g11755 Brassica carinata HOM05D002977 ORTHO05D003225 5.4e-39 166.4 389 39.3
C03p84550 Brassica napus HOM05D002977 ORTHO05D003225 1.3e-37 161.8 167 55.1
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 3.0e-37 160.6 518 34.4
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 1.1e-36 158.7 503 32.8
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.9e-36 157.9 506 35.4
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 3.1e-34 150.6 495 30.1
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 1.2e-33 148.7 501 32.3
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.0e-33 147.9 497 31.4
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 2.6e-33 147.5 484 34.1
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.4e-33 147.1 501 33.7
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 1.3e-32 145.2 532 31.4
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 6.4e-32 142.9 504 31.7
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 6.4e-32 142.9 504 31.2
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 8.3e-32 142.5 512 32.2
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 1.9e-31 141.4 525 30.9
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 3.2e-31 140.6 489 31.5
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 4.1e-31 140.2 520 31.2
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 2.7e-30 137.5 524 29.0
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 4.6e-30 136.7 513 31.2
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 1.1e-28 132.1 526 31.4
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 3.3e-28 130.6 493 34.1
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 9.5e-28 129.0 489 32.1
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 2.1e-27 127.9 503 27.2
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 3.6e-27 127.1 521 28.4
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 1.8e-26 124.8 536 29.1
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 5.2e-26 123.2 501 27.1
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 6.8e-26 122.9 509 30.1
BolC3t20745H Brassica oleracea HOM05D002977 ORTHO05D003225 8.9e-26 122.5 126 54.8
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 8.9e-26 122.5 504 31.7
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 1.5e-25 121.7 532 29.9
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.5e-25 121.7 510 32.5
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 2.0e-25 121.3 510 28.8
arahy.Tifrunner.gnm1.ann1.BQI3IB Arachis hypogaea HOM05D002977 ORTHO05D003225 3.4e-25 120.6 499 37.3
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 3.4e-25 120.6 501 28.7
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 3.4e-25 120.6 497 28.2
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 7.6e-25 119.4 494 27.9
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 6.4e-24 116.3 511 29.7
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 1.1e-23 115.5 520 29.2
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 1.1e-23 115.5 502 28.7
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea HOM05D002977 ORTHO05D003225 1.9e-23 114.8 494 35.6
BcaNung01001 Brassica carinata HOM05D002977 ORTHO05D003225 4.1e-23 113.6 119 59.7
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 4.1e-23 113.6 492 27.2
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 7.1e-23 112.8 498 28.3
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 1.6e-22 111.7 501 25.5
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 2.1e-22 111.3 505 31.5
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 2.1e-22 111.3 521 27.8
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 4.6e-22 110.2 512 27.9
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 4.6e-22 110.2 507 28.6
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 4.6e-22 110.2 511 28.4
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 6.0e-22 109.8 503 29.8
Glyma.05G050000 Glycine max HOM05D002977 ORTHO05D003225 7.8e-22 109.4 493 26.8
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 1.3e-21 108.6 492 28.9
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 1.3e-21 108.6 492 28.9
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 1.3e-21 108.6 507 30.0
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.7e-21 108.2 510 28.8
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.7e-21 108.2 500 29.8
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.0e-21 107.5 414 29.2
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 5.1e-21 106.7 493 26.6
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 5.1e-21 106.7 482 27.6
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 8.6e-21 105.9 204 35.3
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 8.6e-21 105.9 512 30.3
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 1.1e-20 105.5 491 27.3
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 1.1e-20 105.5 400 34.2
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 1.9e-20 104.8 499 28.1
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 2.5e-20 104.4 412 28.9
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 4.3e-20 103.6 414 29.0
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 9.6e-20 102.4 484 29.3
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 2.8e-19 100.9 508 26.2
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.8e-19 100.9 512 30.3
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 1.8e-18 98.2 498 27.1
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 3.1e-18 97.4 496 26.4
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 3.1e-18 97.4 496 26.4
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 4.0e-18 97.1 504 26.8
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 6.9e-18 96.3 535 28.0
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 8.9e-18 95.9 517 29.4
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 2.6e-17 94.4 521 27.6
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 7.6e-17 92.8 471 26.3
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 7.6e-17 92.8 507 27.4
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 7.6e-17 92.8 512 27.9
Lj2A196T48 Lonicera japonica HOM05D002977 ORTHO05D003225 2.9e-16 90.9 370 28.6
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 2.4e-15 87.8 414 27.5
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 4.2e-15 87.0 500 28.6
CSS0002536 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 2.7e-14 84.3 451 29.3
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 1.7e-13 81.6 187 35.3
Ciclev10023936m.g Citrus clementina HOM05D002977 ORTHO05D003225 9.6e-12 75.9 178 36.0
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 2.8e-11 74.3 491 26.9
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 3.6e-11 73.9 477 23.9
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 3.6e-11 73.9 495 27.7
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 6.2e-11 73.2 495 26.1
Cpa.g.sc74.83 Carica papaya HOM05D002977 ORTHO05D003225 1.1e-10 72.4 187 32.6
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 4.0e-10 70.5 122 38.5
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 2.0e-09 68.2 473 25.4
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 2.0e-09 68.2 521 25.9
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 2.6e-09 67.8 389 24.2
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 2.6e-09 67.8 498 27.7
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 9.9e-09 65.9 502 24.5
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 4.9e-08 63.5 452 25.0
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 1.1e-07 62.4 529 23.3
Lj2C196G7 Lonicera japonica HOM05D002977 ORTHO05D003225 1.1e-07 62.4 90 40.0
Oeu062354.1 Olea europaea HOM05D002977 ORTHO05D003225 1.4e-07 62.0 102 43.1
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.9e-07 61.6 497 22.9
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 2.4e-07 61.2 426 30.0
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 3.2e-07 60.8 499 25.3
PSO478G2989 Papaver somniferum HOM05D002977 ORTHO05D003225 5.4e-07 60.1 146 32.9
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 5.4e-07 60.1 481 23.9
Hma1.2p1_0371F.1_g138190 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 9.3e-07 59.3 172 27.9
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 2.1e-06 58.2 504 25.6
Lsat_1_v5_gn_3_5860 Lactuca sativa HOM05D002524 ORTHO05D002718 3.5e-06 57.4 451 29.9
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 3.5e-06 57.4 480 23.1
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 4.6e-06 57.0 482 24.1
Sc01g0008790 Simmondsia chinensis HOM05D002977 ORTHO05D003225 6.0e-06 56.6 80 36.2


User provided reference genes

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