Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 2.0e-43 181.0 85 100.0
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 2.0e-43 181.0 85 100.0
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 2.1e-40 171.0 85 94.1
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 1.1e-38 165.2 85 89.4
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 2.0e-35 154.5 85 84.7
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 2.4e-33 147.5 84 82.1
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 7.8e-32 142.5 85 78.8
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 1.0e-31 142.1 85 77.6
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 1.0e-31 142.1 85 77.6
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 1.0e-31 142.1 85 78.8
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 1.7e-31 141.4 82 80.5
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 8.4e-26 122.5 85 69.4
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 1.4e-25 121.7 85 63.5
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 1.9e-25 121.3 86 68.6
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 5.4e-25 119.8 84 61.9
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 1.3e-23 115.2 73 72.6
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 5.1e-23 113.2 85 60.0
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 8.7e-23 112.5 85 64.7
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 1.1e-22 112.1 81 64.2
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 1.1e-22 112.1 85 62.4
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 2.5e-22 110.9 85 62.4
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 3.3e-22 110.5 85 57.6
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 3.3e-22 110.5 85 63.5
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 3.3e-22 110.5 85 60.0
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 5.6e-22 109.8 85 60.0
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 5.6e-22 109.8 85 62.4
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 5.6e-22 109.8 84 59.5
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 1.3e-21 108.6 85 58.8
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 1.6e-21 108.2 85 57.6
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 1.6e-21 108.2 84 57.1
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.1e-21 107.8 85 57.6
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 2.8e-21 107.5 85 57.6
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 2.8e-21 107.5 85 60.0
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 2.8e-21 107.5 84 61.9
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 3.6e-21 107.1 85 58.8
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 3.6e-21 107.1 85 58.8
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 3.6e-21 107.1 85 57.6
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 3.6e-21 107.1 84 60.7
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 4.8e-21 106.7 85 57.6
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 4.8e-21 106.7 84 58.3
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 4.8e-21 106.7 84 58.3
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 4.8e-21 106.7 85 58.8
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 1.1e-20 105.5 84 57.1
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 2.4e-20 104.4 85 57.6
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 2.4e-20 104.4 85 54.1
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 3.1e-20 104.0 85 55.3
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 4.0e-20 103.6 85 56.5
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 5.3e-20 103.2 85 55.3
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 5.3e-20 103.2 84 56.0
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 9.0e-20 102.4 85 50.6
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 1.5e-19 101.7 85 50.6
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 2.6e-19 100.9 84 58.3
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 3.4e-19 100.5 85 58.8
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 4.4e-19 100.1 85 57.6
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 4.4e-19 100.1 85 54.1
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 5.8e-19 99.8 85 54.1
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 5.8e-19 99.8 85 54.1
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 7.6e-19 99.4 85 52.9
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 9.9e-19 99.0 85 51.8
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.7e-18 98.2 85 52.9
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 2.9e-18 97.4 85 49.4
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 3.8e-18 97.1 85 50.6
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 6.4e-18 96.3 84 48.8
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 6.4e-18 96.3 85 50.6
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 1.4e-17 95.1 85 54.1
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 2.4e-17 94.4 83 49.4
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 2.4e-17 94.4 85 49.4
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 3.2e-17 94.0 81 56.8
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 4.2e-17 93.6 84 51.2
Oeu012315.1 Olea europaea HOM05D007750 ORTHO05D009803 9.3e-17 92.4 85 47.1
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 1.2e-16 92.0 85 48.2
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 2.1e-16 91.3 85 51.8
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 1.0e-15 89.0 84 48.8
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 2.3e-15 87.8 85 43.5
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 3.9e-15 87.0 84 46.4
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 2.5e-14 84.3 85 48.2
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 3.3e-14 84.0 85 47.1
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 1.3e-13 82.0 63 65.1
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 2.8e-13 80.9 86 43.0
Hma1.2p1_0418F.1_g149220 Hydrangea macrophylla HOM05D007750 ORTHO05D009803 2.8e-13 80.9 57 63.2
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 2.8e-13 80.9 84 40.5
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 2.4e-12 77.8 85 49.4
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 2.0e-11 74.7 81 45.7
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 2.7e-08 64.3 84 35.7
Potri.001G171300 Populus trichocarpa HOM05D000891 ORTHO05D000761 7.4e-06 56.2 75 36.0


User provided reference genes

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