Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 0.0e+00 1355.1 711 100.0
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 0.0e+00 1270.0 710 90.1
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 0.0e+00 1260.7 712 88.5
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 0.0e+00 1229.9 712 88.9
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 0.0e+00 1201.0 713 86.1
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 0.0e+00 1198.3 718 87.5
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 0.0e+00 1164.8 727 83.4
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 0.0e+00 1161.0 742 82.5
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 0.0e+00 1137.9 716 80.6
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 0.0e+00 1133.6 718 83.3
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 0.0e+00 1131.7 719 83.7
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 0.0e+00 1129.4 707 81.2
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 0.0e+00 1109.4 629 87.6
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 8.5e-307 1056.6 635 80.0
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 5.5e-306 1053.9 705 79.6
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 2.0e-284 982.2 598 77.1
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 3.2e-282 974.9 586 77.1
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 2.7e-281 971.8 592 77.0
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 5.7e-279 964.1 579 78.2
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 1.8e-277 959.1 586 75.8
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 4.2e-274 948.0 675 73.2
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 1.6e-273 946.0 682 70.4
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 2.1e-273 945.7 581 75.2
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 4.7e-273 944.5 588 75.3
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 6.1e-273 944.1 582 75.1
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 8.0e-273 943.7 592 74.0
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 1.4e-272 943.0 579 75.6
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 8.9e-272 940.3 581 74.0
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 4.4e-271 937.9 689 66.8
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 4.4e-271 937.9 611 73.5
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 1.3e-270 936.4 685 67.4
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 8.3e-270 933.7 613 71.9
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 3.2e-269 931.8 591 72.3
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 5.4e-269 931.0 575 75.3
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 2.0e-268 929.1 587 74.1
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 2.7e-268 928.7 581 74.0
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 2.3e-267 925.6 587 73.8
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 2.9e-267 925.2 575 74.4
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 6.6e-267 924.1 588 73.5
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 3.3e-266 921.8 691 64.1
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 3.3e-266 921.8 624 71.2
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 1.8e-264 916.0 705 63.1
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 4.4e-263 911.4 756 63.5
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 9.8e-263 910.2 594 71.0
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 1.3e-262 909.8 685 66.3
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 1.2e-260 903.3 585 72.5
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 3.5e-260 901.7 741 60.9
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 1.3e-259 899.8 585 72.1
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.7e-259 899.4 581 73.5
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 2.5e-258 895.6 742 60.0
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 3.1e-256 888.6 595 69.7
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 1.7e-254 882.9 745 59.5
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 4.1e-253 878.2 581 71.8
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 6.0e-252 874.4 617 67.3
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 1.8e-248 862.8 585 69.6
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 3.1e-248 862.1 639 64.9
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 4.9e-246 854.7 734 58.7
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 5.4e-245 851.3 746 58.2
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 2.7e-244 849.0 601 67.2
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.7e-244 849.0 628 66.1
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 3.0e-243 845.5 576 68.1
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 3.9e-243 845.1 516 76.2
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 4.0e-240 835.1 586 67.7
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 4.0e-240 835.1 551 71.1
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 7.6e-239 830.9 532 72.6
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 9.9e-239 830.5 570 67.2
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 2.2e-238 829.3 521 73.7
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 1.1e-237 827.0 647 62.9
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 1.9e-237 826.2 538 72.3
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.9e-234 816.2 538 71.9
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 6.2e-233 811.2 764 56.9
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.9e-230 801.6 583 67.6
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 1.2e-223 780.4 485 74.0
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 7.6e-223 777.7 492 74.4
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 1.4e-221 773.5 732 57.4
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.6e-217 760.0 527 69.6
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.4e-216 756.9 692 58.2
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 1.9e-213 746.5 554 65.2
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 7.9e-212 741.1 740 53.6
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 8.4e-206 721.1 512 66.2
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.9e-205 719.9 527 66.4
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.9e-205 719.9 578 61.4
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 7.9e-204 714.5 581 60.8
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.0e-199 699.9 545 63.3
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 5.9e-199 698.4 591 60.6
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 8.5e-198 694.5 583 59.5
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 9.7e-194 681.0 413 77.2
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 9.7e-194 681.0 398 77.4
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 6.3e-193 678.3 577 59.1
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 7.7e-191 671.4 511 65.8
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 5.9e-183 645.2 502 64.3
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.0e-182 644.4 394 75.6
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.7e-169 600.5 719 48.0
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 3.8e-166 589.3 570 55.3
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 2.5e-165 586.6 398 68.8
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 1.7e-158 563.9 352 75.6
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 1.0e-147 528.1 589 49.1
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 8.1e-140 501.9 376 62.0
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 3.5e-135 486.5 581 45.1
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 3.5e-119 433.3 283 73.5
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.9e-105 387.1 315 61.6
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 2.3e-86 324.3 210 69.0
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 1.0e-78 298.9 297 53.2
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 3.3e-77 293.9 274 56.2
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 2.0e-69 268.1 199 65.8
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 1.2e-66 258.8 173 69.9
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 7.7e-58 229.6 689 28.0
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.5e-56 225.3 159 65.4
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 4.2e-56 223.8 263 58.2
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 8.8e-46 189.5 118 80.5
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 2.6e-45 188.0 170 57.6
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 4.9e-44 183.7 91 85.7
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 1.2e-42 179.1 677 25.6
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.5e-40 172.2 175 57.1
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 2.8e-39 167.9 115 67.8
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 3.0e-38 164.5 482 24.7
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 1.1e-35 156.0 590 25.4
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.1e-35 156.0 134 59.7
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 7.0e-35 153.3 103 73.8
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 9.2e-35 152.9 339 30.7
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 1.7e-33 148.7 119 57.1
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 5.0e-33 147.1 616 25.3
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 2.5e-32 144.8 212 42.9
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 1.2e-31 142.5 204 42.6
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 2.1e-31 141.7 210 38.6
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 8.3e-28 129.8 78 80.8
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.0e-25 122.9 83 77.1
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.7e-25 122.1 78 64.1
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 6.8e-22 110.2 59 78.0
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 3.7e-20 104.4 174 43.1
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 1.6e-18 99.0 59 72.9
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 2.5e-16 91.7 132 38.6
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 1.1e-11 76.3 41 78.0


User provided reference genes

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