Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 2917.9 1469 100.0
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 2640.9 1494 90.2
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 2637.4 1471 91.6
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 2553.9 1472 87.8
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 2536.5 1472 87.3
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 2491.1 1399 90.9
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 2432.1 1485 84.8
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 2431.0 1473 85.3
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 2421.0 1473 85.3
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 2421.0 1486 84.3
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 2420.2 1474 84.7
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 2420.2 1474 84.7
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 2407.5 1539 80.1
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 2068.1 1474 72.3
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1633.6 1520 57.6
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1617.4 1528 57.3
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1611.7 1525 57.0
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1605.9 1526 56.8
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1602.0 1519 57.5
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1600.1 1508 57.1
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1598.6 1544 56.2
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1591.2 1508 56.9
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1580.1 1512 57.4
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1578.1 1508 57.0
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1572.8 1516 55.9
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1566.6 1563 54.8
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1565.8 1486 57.7
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1560.0 1527 56.0
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1558.1 1520 55.4
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1549.3 1511 55.5
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1537.3 1511 54.8
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1531.5 1471 56.4
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1518.8 1531 54.1
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1513.4 1523 54.6
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1509.2 1558 53.9
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1506.1 1549 53.8
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1505.3 1502 55.5
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1494.2 1610 51.2
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 0.0e+00 1481.1 873 85.8
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1473.0 1505 53.2
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1469.1 1524 53.1
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1449.9 1607 50.6
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1448.7 1524 52.6
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1448.7 1501 52.6
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1442.6 1523 52.9
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1441.4 1531 51.8
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1439.1 1509 52.6
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1438.3 1517 52.7
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1434.9 1515 52.2
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1428.3 1513 52.7
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1427.9 1512 52.1
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1427.5 1510 52.9
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1427.2 1511 51.7
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1426.0 1514 51.6
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1421.0 1535 52.2
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1421.0 1508 52.4
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1419.8 1520 51.8
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1414.8 1510 52.1
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1413.3 1533 50.4
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1403.3 1527 51.1
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1394.4 1527 50.9
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1394.4 1419 53.7
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1394.0 1507 50.7
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1393.6 1549 50.9
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1393.3 1496 51.7
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1391.3 1521 50.0
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1384.0 1507 51.0
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1383.6 1332 56.2
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1382.9 1569 49.8
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1377.1 1542 50.6
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1368.6 1505 50.4
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1362.1 1517 50.7
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1359.4 1539 49.6
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1351.7 1494 49.9
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1350.5 1507 50.2
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1349.0 1523 49.9
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1348.2 1577 48.9
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1345.1 1495 50.4
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1331.6 1537 49.4
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1328.2 1517 49.2
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1325.5 1473 49.9
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1309.3 1513 48.8
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1305.0 1411 52.5
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1303.9 1495 47.8
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1296.6 1538 49.2
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1276.5 1506 48.7
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1275.8 1523 48.5
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1233.0 1365 51.0
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1228.0 1580 45.6
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1191.8 1295 51.1
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1172.5 1545 43.6
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1161.0 1347 49.7
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1154.4 1537 45.9
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1081.2 1122 53.0
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 1.3e-309 1067.0 1534 42.0
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 1.8e-298 1030.0 1084 52.9
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 6.3e-264 915.2 987 52.3
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 6.3e-240 835.5 1636 36.0
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 5.3e-178 629.8 1480 31.1
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.6e-174 618.2 479 66.0
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 4.6e-166 590.1 483 64.6
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.4e-149 535.4 1028 34.8
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.0e-133 482.6 692 40.0
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 1.1e-111 409.5 403 54.6
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 5.5e-66 257.7 600 30.2
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 1.6e-54 219.5 207 56.0
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 4.6e-49 201.4 164 63.4
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 2.6e-31 142.5 103 61.2
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 1.3e-27 130.2 91 61.5
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 8.0e-25 120.9 92 65.2
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 3.4e-23 115.5 89 56.2
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 5.7e-23 114.8 90 61.1
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.7e-22 112.1 86 65.1
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.7e-22 112.1 86 65.1
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 1.7e-19 103.2 76 65.8
AL6G45530 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 7.2e-18 97.8 51 86.3
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.0e-16 94.0 67 76.1


User provided reference genes

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