Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 2754.9 1365 100.0
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 2496.1 1399 90.9
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 2306.2 1423 83.8
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 2285.0 1400 84.4
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 2211.4 1401 80.9
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 2198.3 1407 80.2
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 2112.4 1413 78.5
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 2111.6 1401 78.9
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 2109.7 1402 79.0
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 2103.6 1414 78.0
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 2102.8 1402 78.4
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 2102.8 1402 78.4
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 2099.7 1464 74.3
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1803.5 1407 67.2
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 0.0e+00 1480.3 873 85.7
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1393.3 1445 53.4
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1375.1 1458 52.7
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1368.2 1439 52.8
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1367.8 1463 52.8
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1362.1 1454 52.5
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1358.6 1439 52.5
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1358.6 1463 51.8
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1355.9 1457 52.4
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1353.6 1444 53.1
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1345.9 1453 52.6
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1342.8 1447 51.7
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1336.6 1450 51.5
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1330.5 1442 52.1
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1329.3 1452 51.9
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1325.1 1460 50.9
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1317.8 1444 51.4
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1315.8 1486 50.4
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1313.1 1440 50.6
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1293.5 1462 49.9
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1274.6 1456 50.1
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1273.8 1431 50.9
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1269.6 1432 49.6
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1269.6 1544 47.1
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1267.3 1489 49.3
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1262.3 1478 49.2
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1241.5 1438 48.7
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1237.2 1453 49.3
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1235.3 1420 49.6
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1232.6 1458 48.2
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1226.8 1454 48.2
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1225.7 1536 46.4
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1207.6 1445 48.4
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1202.6 1462 46.3
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1201.8 1435 48.2
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1200.7 1437 48.1
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1198.7 1439 47.8
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1198.7 1437 48.3
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1197.6 1445 47.8
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1197.6 1439 48.6
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1196.4 1435 48.1
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1194.9 1442 47.6
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1193.7 1444 47.5
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1191.4 1454 47.3
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1187.6 1464 47.5
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1186.4 1451 47.7
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1186.0 1441 47.6
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1184.1 1456 47.0
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1173.3 1439 46.1
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1165.6 1425 47.0
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1164.4 1484 45.9
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1161.7 1475 46.4
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1161.7 1500 45.3
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1156.7 1457 45.3
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1156.0 1430 46.1
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1153.3 1466 46.4
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1152.1 1265 51.1
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1151.0 1447 46.9
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1147.5 1408 47.6
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1140.6 1440 46.0
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1135.2 1450 46.1
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1134.8 1474 45.2
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1134.4 1458 45.2
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1132.9 1445 46.4
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1114.8 1445 45.5
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1111.7 1467 45.0
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1105.5 1409 45.4
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1102.8 1443 45.1
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1085.1 1440 43.4
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1075.8 1441 44.2
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 3.7e-311 1072.0 1463 44.8
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 6.5e-311 1071.2 1372 45.9
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 1.1e-310 1070.5 1428 44.7
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 5.4e-310 1068.1 1456 44.7
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 1.9e-294 1016.5 1512 41.4
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 3.9e-284 982.2 1477 40.5
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 1.7e-279 966.8 1221 45.9
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.1e-273 947.6 1293 45.0
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 2.9e-271 939.5 1489 41.4
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 4.5e-264 915.6 997 51.9
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 3.7e-250 869.4 1457 37.9
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 1.1e-246 857.8 1055 47.1
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 3.5e-232 809.7 1010 46.8
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 8.6e-191 672.2 1558 32.7
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.1e-148 532.3 1028 34.6
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 1.0e-143 515.8 1400 29.5
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 2.4e-132 478.0 692 39.7
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 8.8e-111 406.4 398 55.5
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 5.0e-106 390.6 427 52.2
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 4.9e-101 374.0 412 53.2
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 7.8e-67 260.4 600 30.5
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 1.5e-54 219.5 207 56.0
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 2.4e-47 195.7 164 62.2
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 7.4e-25 120.9 92 65.2
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 3.1e-23 115.5 89 56.2
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 5.3e-23 114.8 90 61.1
AL6G45530 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 6.7e-18 97.8 51 86.3
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.7e-16 92.0 67 74.6
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 6.7e-10 71.2 35 77.1
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 6.7e-10 71.2 35 77.1
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.6e-09 69.3 49 71.4
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.6e-09 69.3 49 71.4
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 6.3e-08 64.7 71 53.5


User provided reference genes

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