Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 4.4e-153 544.7 291 100.0
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 1.1e-132 476.9 291 84.9
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 1.3e-117 426.8 291 76.6
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 1.4e-109 400.2 299 71.6
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 2.5e-108 396.0 298 69.8
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 1.8e-93 346.7 297 65.7
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 8.0e-86 321.2 300 61.0
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 2.0e-84 316.6 300 61.0
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 2.2e-83 313.2 316 56.6
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 5.3e-82 308.5 313 58.1
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 7.0e-82 308.1 300 58.7
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 1.6e-78 297.0 315 54.9
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 4.8e-75 285.4 179 79.9
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 1.5e-47 194.1 113 82.3
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 6.6e-32 142.1 160 50.0
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 2.1e-30 137.1 161 47.2
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 4.8e-30 136.0 158 48.1
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 2.0e-28 130.6 158 48.1
CARHR255720 Cardamine hirsuta HOM05D005777 ORTHO05D006854 2.6e-28 130.2 109 67.0
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 4.4e-28 129.4 161 46.0
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 2.9e-27 126.7 162 45.7
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 4.9e-27 125.9 161 45.3
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 1.1e-26 124.8 165 45.5
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.2e-26 123.2 157 47.1
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.2e-26 123.2 157 47.1
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.2e-26 122.9 162 46.3
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.4e-26 122.5 159 45.9
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.4e-26 122.5 162 45.7
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.2e-25 121.3 157 46.5
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 1.2e-25 121.3 162 45.7
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.6e-25 120.9 159 45.9
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.1e-25 120.6 158 45.6
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 3.5e-25 119.8 163 43.6
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 3.5e-25 119.8 161 46.0
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.0e-25 119.0 158 44.9
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 6.0e-25 119.0 162 45.1
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 7.8e-25 118.6 162 45.7
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 1.0e-24 118.2 154 44.8
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.0e-24 118.2 159 45.3
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.0e-24 118.2 161 44.1
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 3.0e-24 116.7 161 44.7
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 5.1e-24 115.9 162 43.2
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 1.1e-23 114.8 159 42.8
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 4.3e-23 112.8 162 42.0
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 4.3e-23 112.8 148 46.6
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 5.6e-23 112.5 170 42.9
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 7.3e-23 112.1 155 44.5
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 1.3e-22 111.3 163 46.0
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 1.6e-22 110.9 165 43.0
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 2.1e-22 110.5 163 42.9
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 2.1e-22 110.5 175 41.7
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 2.1e-22 110.5 163 44.8
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 2.1e-22 110.5 163 45.4
Aa31LG9G11230 Aethionema arabicum HOM05D005777 ORTHO05D006854 6.2e-22 109.0 176 43.8
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 6.2e-22 109.0 153 42.5
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 6.2e-22 109.0 164 42.1
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 1.1e-21 108.2 163 44.8
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 1.4e-21 107.8 164 39.6
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 1.8e-21 107.5 153 46.4
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 2.4e-21 107.1 162 40.7
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 2.4e-21 107.1 162 42.0
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 4.0e-21 106.3 194 38.1
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 6.9e-21 105.5 147 44.2
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 6.9e-21 105.5 179 39.1
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 9.0e-21 105.1 151 43.7
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.5e-20 104.4 135 44.4
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.0e-20 104.0 133 47.4
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 2.0e-20 104.0 155 44.5
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 2.6e-20 103.6 163 41.1
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.6e-20 102.1 173 38.2
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.9e-20 101.7 212 35.4
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 9.9e-20 101.7 167 41.9
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.3e-19 101.3 79 63.3
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.9e-19 100.1 79 60.8
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 4.9e-19 99.4 157 39.5
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 6.4e-19 99.0 132 43.2
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 3.2e-18 96.7 164 39.6
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 4.2e-18 96.3 128 44.5
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 1.2e-17 94.7 179 38.5
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 2.7e-17 93.6 147 42.9
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 3.5e-17 93.2 135 41.5
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 3.5e-17 93.2 128 42.2
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 3.5e-17 93.2 75 58.7
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 6.0e-17 92.4 134 43.3
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 1.8e-16 90.9 164 37.8
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 3.0e-16 90.1 148 37.2
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 3.9e-16 89.7 163 37.4
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 6.7e-16 89.0 84 50.0
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.5e-15 87.8 70 58.6
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 1.5e-15 87.8 89 51.7
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 1.5e-15 87.8 114 43.0
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 1.6e-14 84.3 123 44.7
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 1.4e-13 81.3 153 35.9
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.8e-13 80.9 84 50.0
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 2.4e-13 80.5 84 47.6
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 3.1e-13 80.1 221 32.1
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 6.9e-13 79.0 121 38.8
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 9.0e-13 78.6 85 49.4
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 7.6e-12 75.5 237 27.8
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 1.7e-11 74.3 246 28.0
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 2.9e-11 73.6 88 42.0
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 3.8e-11 73.2 197 31.5
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 6.5e-11 72.4 118 39.0
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 1.1e-10 71.6 75 48.0
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.4e-10 71.2 90 42.2
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 4.2e-10 69.7 262 28.6
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 5.5e-10 69.3 82 45.1
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.5e-10 69.3 76 52.6
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.5e-10 69.3 90 42.2
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 1.6e-09 67.8 103 35.0
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 4.6e-09 66.2 88 39.8
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.9e-09 65.5 69 44.9
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 8.7e-08 62.0 76 43.4
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 3.3e-07 60.1 79 39.2


User provided reference genes

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