Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G44470 Arabidopsis lyrata HOM05D007410 ORTHO05D009500 1.8e-63 245.7 126 100.0
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 1.6e-38 162.9 86 94.2
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 5.1e-37 157.9 87 89.7
Thhalv10015810m.g Eutrema salsugineum HOM05D007410 ORTHO05D009500 4.3e-36 154.8 87 86.2
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 5.6e-36 154.5 87 87.4
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 2.6e-33 145.6 87 81.6
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 3.4e-33 145.2 87 81.6
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 7.6e-33 144.1 87 80.5
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 9.9e-33 143.7 85 81.2
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 1.3e-32 143.3 87 79.3
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 1.7e-32 142.9 89 75.3
SGA_v2.0_scaffold75G24801 Striga asiatica HOM05D007410 ORTHO05D009500 1.7e-24 116.3 115 50.4
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 9.3e-23 110.5 65 81.5
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 7.8e-22 107.5 123 42.3
Peaxi162Scf00802g00013 Petunia axillaris HOM05D007410 ORTHO05D009500 3.0e-21 105.5 121 41.3
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 3.9e-21 105.1 120 44.2
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 1.5e-20 103.2 109 45.9
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 3.3e-20 102.1 111 46.8
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 2.1e-19 99.4 111 39.6
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 1.8e-18 96.3 122 37.7
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 9.0e-18 94.0 109 45.9
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.0e-17 92.8 102 41.2
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.6e-17 92.4 102 40.2
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 5.8e-17 91.3 108 45.4
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 5.8e-17 91.3 102 41.2
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 7.6e-17 90.9 109 44.0
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 2.9e-16 89.0 123 39.0
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 4.9e-16 88.2 108 42.6
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 2.1e-14 82.8 108 42.6
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.1e-14 82.8 125 40.8
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 1.3e-13 80.1 83 43.4
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 3.0e-13 79.0 83 47.0
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 1.5e-12 76.6 116 36.2
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 1.5e-12 76.6 85 42.4
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 2.5e-12 75.9 91 44.0
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 5.6e-12 74.7 93 44.1
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 2.1e-11 72.8 80 42.5
PSO384G3142 Papaver somniferum HOM05D025533 ORTHO05D021545 2.8e-11 72.4 101 37.6
ECA233G1087 Erigeron canadensis HOM05D001398 ORTHO05D001467 4.8e-11 71.6 90 38.9
TPR.G28359 Trifolium pratense HOM05D007410 ORTHO05D009500 1.1e-10 70.5 117 32.5
PSO135G0775 Papaver somniferum HOM05D025533 ORTHO05D021545 5.3e-10 68.2 101 35.6
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 3.4e-09 65.5 109 33.0
HanXRQChr17g0535541 Helianthus annuus HOM05D007410 ORTHO05D009500 3.4e-09 65.5 119 31.1
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 5.8e-09 64.7 97 34.0
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 5.8e-09 64.7 97 34.0
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 7.6e-09 64.3 87 33.3
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 1.7e-08 63.2 87 32.2
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 1.7e-08 63.2 87 34.5
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 2.2e-08 62.8 95 31.6
Thecc.05G080100 Theobroma cacao HOM05D007410 ORTHO05D009500 2.9e-08 62.4 53 50.9
SMO367G0987 Selaginella moellendorffii HOM05D007700 ORTHO05D009669 4.9e-08 61.6 91 31.9
Ah.10g030910 Amaranthus hybridus HOM05D005973 ORTHO05D007285 6.4e-08 61.2 115 30.4
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 8.4e-08 60.8 67 43.3
Nitab4.5_0000316g0260 Nicotiana tabacum HOM05D005973 ORTHO05D007285 8.4e-08 60.8 93 31.2
Sabra10G0194300 Salix brachista HOM05D001909 ORTHO05D007079 8.4e-08 60.8 119 30.3
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 8.4e-08 60.8 95 31.6
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 8.4e-08 60.8 78 34.6
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 1.1e-07 60.5 80 33.8
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 1.1e-07 60.5 67 43.3
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 1.1e-07 60.5 118 30.5
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 1.4e-07 60.1 66 43.9
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 1.4e-07 60.1 113 31.0
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 1.4e-07 60.1 83 32.5
FAN21G0605 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.9e-07 59.7 110 29.1
Nitab4.5_0001775g0060 Nicotiana tabacum HOM05D005973 ORTHO05D007285 1.9e-07 59.7 93 30.1
AUR62037245 Chenopodium quinoa HOM05D005973 ORTHO05D007285 2.4e-07 59.3 113 31.9
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 2.4e-07 59.3 84 34.5
QL05p089319 Quercus lobata HOM05D005973 ORTHO05D007285 5.5e-07 58.2 115 29.6
Cpa.g.sc116.29 Carica papaya HOM05D002007 ORTHO05D000355 7.1e-07 57.8 124 26.6
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 9.3e-07 57.4 60 43.3
Lj3g0002161 Lotus japonicus HOM05D005973 ORTHO05D007285 9.3e-07 57.4 114 28.1
CAN.G410.36 Capsicum annuum HOM05D005973 ORTHO05D007285 1.2e-06 57.0 93 29.0
SalBow8G3910 Salvia bowleyana HOM05D007251 ORTHO05D009266 1.2e-06 57.0 113 30.1
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 1.2e-06 57.0 93 29.0
AUR62026807 Chenopodium quinoa HOM05D005973 ORTHO05D007285 1.6e-06 56.6 112 30.4
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 1.6e-06 56.6 65 41.5
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 2.1e-06 56.2 72 31.9
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 2.1e-06 56.2 85 31.8
ClCG03G008670 Citrullus lanatus HOM05D002007 ORTHO05D000355 2.7e-06 55.8 118 30.5
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 2.7e-06 55.8 74 33.8
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 2.7e-06 55.8 77 33.8
QL10p041196 Quercus lobata HOM05D005973 ORTHO05D007285 2.7e-06 55.8 110 30.0
SalBow8G5364 Salvia bowleyana HOM05D007251 ORTHO05D009266 2.7e-06 55.8 113 28.3
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 2.7e-06 55.8 110 32.7
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 3.5e-06 55.5 119 26.9
FAN03G3455 Fragaria x ananassa HOM05D007212 ORTHO05D009094 3.5e-06 55.5 95 29.5
Hma1.2p1_1041F.1_g251090 Hydrangea macrophylla HOM05D006503 ORTHO05D008116 3.5e-06 55.5 103 31.1
Os08g0402600 Oryza sativa ssp. japonica HOM05D022935 ORTHO05D020958 3.5e-06 55.5 72 38.9
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 3.5e-06 55.5 115 29.6
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 4.6e-06 55.1 121 26.4
Glyma.18G295400 Glycine max HOM05D008684 ORTHO05D010796 4.6e-06 55.1 122 27.9
HanXRQChr03g0090961 Helianthus annuus HOM05D000162 ORTHO05D000090 4.6e-06 55.1 104 30.8
AagrBONN_evm.TU.Sc2ySwM_362.333 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.0e-06 54.7 122 26.2
Peaxi162Scf01242g00002 Petunia axillaris HOM05D000001 ORTHO05D000003 6.0e-06 54.7 78 32.1
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 6.0e-06 54.7 127 29.9
Hund21880 Selenicereus undatus HOM05D000162 ORTHO05D000090 6.0e-06 54.7 122 28.7
HPP92_000751 Vanilla planifolia HOM05D005973 ORTHO05D007285 6.0e-06 54.7 115 28.7
GSVIVG01000864001 Vitis vinifera HOM05D005973 ORTHO05D007285 6.0e-06 54.7 115 27.8
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 7.9e-06 54.3 115 27.0
Cc08_g01470 Coffea canephora HOM05D000001 ORTHO05D000003 7.9e-06 54.3 84 29.8
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 7.9e-06 54.3 115 26.1
Oeu004393.1 Olea europaea HOM05D000001 ORTHO05D000003 7.9e-06 54.3 100 28.0
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 7.9e-06 54.3 124 28.2
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 7.9e-06 54.3 123 22.8


User provided reference genes

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