Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G44250 Arabidopsis lyrata HOM05D003414 ORTHO05D008133 9.8e-98 360.1 184 100.0
AL3G22240 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.6e-31 138.7 67 98.5
AL3G39940 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.6e-31 138.7 67 98.5
AL6G39020 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.6e-31 138.7 67 98.5
Sp1g06070 Schrenkiella parvula HOM05D005872 ORTHO05D008133 9.4e-24 114.4 66 92.4
Carub.0001s0662 Capsella rubella HOM05D005872 ORTHO05D008133 1.2e-23 114.0 66 93.9
CARHR007030 Cardamine hirsuta HOM05D005872 ORTHO05D008133 1.2e-23 114.0 66 92.4
AL1G17470 Arabidopsis lyrata HOM05D005872 ORTHO05D008133 2.7e-23 112.8 66 92.4
AT1G07320 Arabidopsis thaliana HOM05D005872 ORTHO05D008133 6.1e-23 111.7 66 90.9
Thhalv10008395m.g Eutrema salsugineum HOM05D005872 ORTHO05D008133 1.4e-22 110.5 66 89.4
Aa31LG1G6580 Aethionema arabicum HOM05D005872 ORTHO05D008133 1.7e-20 103.6 66 84.8
A10p05890 Brassica napus HOM05D005872 ORTHO05D008133 2.2e-20 103.2 66 84.8
BcaC07g42461 Brassica carinata HOM05D005872 ORTHO05D008133 4.8e-20 102.1 66 83.3
BolC5t29311H Brassica oleracea HOM05D005872 ORTHO05D008133 4.8e-20 102.1 66 83.3
C05p05390 Brassica napus HOM05D005872 ORTHO05D008133 6.3e-20 101.7 66 83.3
BraA10t42851Z Brassica rapa HOM05D005872 ORTHO05D008133 6.3e-20 101.7 66 83.3
Carub.0006s0456 Capsella rubella HOM05D003414 ORTHO05D003913 1.0e-17 94.4 46 93.5
CARHR207610 Cardamine hirsuta HOM05D003414 ORTHO05D003913 1.0e-17 94.4 46 91.3
Sp6g37220 Schrenkiella parvula HOM05D003414 ORTHO05D003913 2.2e-17 93.2 46 91.3
AL6G15560 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 3.8e-17 92.4 46 93.5
Thhalv10014432m.g Eutrema salsugineum HOM05D003414 ORTHO05D003913 3.8e-17 92.4 46 91.3
THA.LOC104808420 Tarenaya hassleriana HOM05D005872 ORTHO05D008133 5.0e-17 92.0 66 77.3
BcaB01g05755 Brassica carinata HOM05D003414 ORTHO05D003913 8.5e-17 91.3 46 91.3
AT5G05670 Arabidopsis thaliana HOM05D003414 ORTHO05D003913 1.1e-16 90.9 46 89.1
A03p02400 Brassica napus HOM05D000093 ORTHO05D003913 1.9e-16 90.1 46 89.1
BraA03t09601Z Brassica rapa HOM05D003414 ORTHO05D003913 1.9e-16 90.1 46 89.1
BolC9t59879H Brassica oleracea HOM05D003414 ORTHO05D003913 4.2e-16 89.0 46 87.0
BcaB03g16667 Brassica carinata HOM05D003414 ORTHO05D003913 5.5e-16 88.6 46 84.8
C09p71170 Brassica napus HOM05D003414 ORTHO05D003913 5.5e-16 88.6 46 87.0
BolC3t12827H Brassica oleracea HOM05D003414 ORTHO05D003913 5.5e-16 88.6 46 89.1
Thhalv10022817m.g Eutrema salsugineum HOM05D003414 ORTHO05D003913 5.5e-16 88.6 46 84.8
Sp3g32260 Schrenkiella parvula HOM05D003414 ORTHO05D003913 9.4e-16 87.8 46 84.8
AT2G18770 Arabidopsis thaliana HOM05D003414 ORTHO05D003913 1.2e-15 87.4 46 82.6
BcaC06g36459 Brassica carinata HOM05D003414 ORTHO05D003913 1.2e-15 87.4 46 82.6
A07p01870 Brassica napus HOM05D001097 ORTHO05D001009 1.2e-15 87.4 46 82.6
C07p04000 Brassica napus HOM05D001097 ORTHO05D001009 1.2e-15 87.4 46 82.6
BolC7t40789H Brassica oleracea HOM05D003414 ORTHO05D003913 1.2e-15 87.4 46 82.6
BraA07t27987Z Brassica rapa HOM05D003414 ORTHO05D003913 1.2e-15 87.4 46 82.6
AL3G53170 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 7.9e-15 84.7 46 82.6
CARHR109370 Cardamine hirsuta HOM05D003414 ORTHO05D003913 1.0e-14 84.3 46 78.3
THA.LOC104826298 Tarenaya hassleriana HOM05D005872 ORTHO05D008133 2.3e-14 83.2 66 71.2
Carub.0003s3304 Capsella rubella HOM05D003414 ORTHO05D003913 3.0e-14 82.8 46 80.4
BcaB01g05959 Brassica carinata HOM05D003414 ORTHO05D003913 3.9e-14 82.4 43 88.4
A10p30690 Brassica napus HOM05D003414 ORTHO05D003913 3.9e-14 82.4 44 84.1
C03p02730 Brassica napus HOM05D003414 ORTHO05D003913 3.9e-14 82.4 43 88.4
BraA10t45110Z Brassica rapa HOM05D003414 ORTHO05D003913 3.9e-14 82.4 44 84.1
AL6G25810 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 2.0e-13 80.1 45 77.8
THA.LOC104807784 Tarenaya hassleriana HOM05D003414 ORTHO05D003913 2.0e-13 80.1 46 73.9
Aa31LG8G15890 Aethionema arabicum HOM05D003414 ORTHO05D003913 1.3e-12 77.4 44 72.7
Atru.chr11.2070 Acer truncatum HOM05D003414 ORTHO05D003913 1.7e-12 77.0 46 69.6
MD10G1002700 Malus domestica HOM05D003414 ORTHO05D003913 2.8e-12 76.3 45 71.1
AL3G45690 Arabidopsis lyrata HOM05D005872 ORTHO05D080292 3.7e-12 75.9 39 100.0
TAR629G3074 Trochodendron aralioides HOM05D003414 ORTHO05D003913 4.8e-12 75.5 46 69.6
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 6.3e-12 75.1 71 57.7
Eucgr.H02550 Eucalyptus grandis HOM05D003414 ORTHO05D003913 6.3e-12 75.1 46 65.2
MD15G1134100 Malus domestica HOM05D003414 ORTHO05D003913 6.3e-12 75.1 45 68.9
Cfa009179 Carpinus fangiana HOM05D003414 ORTHO05D003913 1.1e-11 74.3 46 67.4
GSVIVG01013784001 Vitis vinifera HOM05D003414 ORTHO05D003913 1.1e-11 74.3 46 65.2
CANSAT01G0332 Cannabis sativa HOM05D003414 ORTHO05D003913 1.4e-11 73.9 46 67.4
THA.LOC104824779 Tarenaya hassleriana HOM05D003414 ORTHO05D003913 1.4e-11 73.9 46 65.2
arahy.Tifrunner.gnm1.ann1.27SX2S Arachis hypogaea HOM05D003414 ORTHO05D003913 1.8e-11 73.6 46 65.2
arahy.Tifrunner.gnm1.ann1.566SHA Arachis hypogaea HOM05D003414 ORTHO05D003913 1.8e-11 73.6 46 65.2
TWI18G0866 Tripterygium wilfordii HOM05D003414 ORTHO05D003913 1.8e-11 73.6 46 67.4
COL.COLO4_16919 Corchorus olitorius HOM05D003414 ORTHO05D003913 2.4e-11 73.2 46 63.0
QL03p059258 Quercus lobata HOM05D003414 ORTHO05D003913 2.4e-11 73.2 45 71.1
Ciclev10032463m.g Citrus clementina HOM05D003414 ORTHO05D003913 3.1e-11 72.8 46 67.4
Thecc.03G311500 Theobroma cacao HOM05D003414 ORTHO05D003913 4.1e-11 72.4 46 67.4
TPR.G16233 Trifolium pratense HOM05D003414 ORTHO05D003913 4.1e-11 72.4 46 65.2
TAR371G0246 Trochodendron aralioides HOM05D003414 ORTHO05D003913 4.1e-11 72.4 46 65.2
Manes.13G027800 Manihot esculenta HOM05D003414 ORTHO05D003913 5.3e-11 72.0 46 60.9
Lj2g0023712 Lotus japonicus HOM05D003414 ORTHO05D003913 7.0e-11 71.6 46 63.0
DCAR_010112 Daucus carota HOM05D003414 ORTHO05D003913 9.1e-11 71.2 46 67.4
Gohir.A08G153100 Gossypium hirsutum HOM05D003414 ORTHO05D003913 1.2e-10 70.9 46 63.0
Oeu056411.1 Olea europaea HOM05D003414 ORTHO05D003913 1.2e-10 70.9 46 60.9
Duzib084G0257 Durio zibethinus HOM05D003414 ORTHO05D003913 1.6e-10 70.5 46 63.0
Gohir.D08G174000 Gossypium hirsutum HOM05D003414 ORTHO05D003913 1.6e-10 70.5 46 60.9
HanXRQChr13g0415431 Helianthus annuus HOM05D003414 ORTHO05D003913 1.6e-10 70.5 46 65.2
vmacro01152 Vaccinium macrocarpon HOM05D003414 ORTHO05D003913 1.6e-10 70.5 45 64.4
PGR119G0039 Punica granatum HOM05D003414 ORTHO05D003913 2.0e-10 70.1 46 60.9
Potri.002G020900 Populus trichocarpa HOM05D003414 ORTHO05D003913 2.6e-10 69.7 45 64.4
Manes.12G026100 Manihot esculenta HOM05D003414 ORTHO05D003913 3.5e-10 69.3 46 63.0
Medtr4g071550 Medicago truncatula HOM05D003414 ORTHO05D003913 3.5e-10 69.3 45 64.4
Rhsim12G0043300 Rhododendron simsii HOM05D003414 ORTHO05D003913 3.5e-10 69.3 45 62.2
MELO3C011981.2 Cucumis melo HOM05D003414 ORTHO05D003913 4.5e-10 68.9 45 64.4
Lalb_Chr16g0382141 Lupinus albus HOM05D003414 ORTHO05D003913 4.5e-10 68.9 46 60.9
Oeu059926.1 Olea europaea HOM05D003414 ORTHO05D003913 4.5e-10 68.9 46 58.7
ClCG05G025490 Citrullus lanatus HOM05D003414 ORTHO05D003913 5.9e-10 68.6 45 62.2
Psat7g182200 Pisum sativum HOM05D003414 ORTHO05D003913 5.9e-10 68.6 46 60.9
Haze_12213 Corylus avellana HOM05D003414 ORTHO05D003913 7.7e-10 68.2 43 67.4
Gorai.004G181700 Gossypium raimondii HOM05D003414 ORTHO05D003913 7.7e-10 68.2 46 60.9
Lsat_1_v5_gn_1_119941 Lactuca sativa HOM05D003414 ORTHO05D003913 7.7e-10 68.2 46 67.4
Lsat_1_v5_gn_5_70981 Lactuca sativa HOM05D003414 ORTHO05D003913 7.7e-10 68.2 46 67.4
Lsat_1_v5_gn_6_83720 Lactuca sativa HOM05D003414 ORTHO05D003913 7.7e-10 68.2 46 67.4
Lalb_Chr09g0326281 Lupinus albus HOM05D003414 ORTHO05D003913 7.7e-10 68.2 46 63.0
PGSC0003DMG400020871 Solanum tuberosum HOM05D003414 ORTHO05D003913 7.7e-10 68.2 67 47.8
MSTRG.13359 Avicennia marina HOM05D003414 ORTHO05D003913 1.0e-09 67.8 45 60.0
Nitab4.5_0000329g0140 Nicotiana tabacum HOM05D003414 ORTHO05D003913 1.0e-09 67.8 46 60.9
Nitab4.5_0001819g0040 Nicotiana tabacum HOM05D003414 ORTHO05D003913 1.0e-09 67.8 46 60.9
Prupe.5G031200 Prunus persica HOM05D003414 ORTHO05D003913 1.0e-09 67.8 45 62.2
Aqoxy6G00029 Aquilegia oxysepala HOM05D003414 ORTHO05D003913 1.3e-09 67.4 46 56.5
CDE07G0297 Ceratophyllum demersum HOM05D003414 ORTHO05D003913 1.3e-09 67.4 46 63.0
Solyc03g112450.4 Solanum lycopersicum HOM05D003414 ORTHO05D003913 1.3e-09 67.4 46 58.7
ATR0763G280 Amborella trichopoda HOM05D003414 ORTHO05D003913 1.7e-09 67.0 45 57.8
CiPaw.05G186600 Carya illinoinensis HOM05D003414 ORTHO05D003913 1.7e-09 67.0 42 69.0
CsaV3_5G031410 Cucumis sativus L. HOM05D003414 ORTHO05D003913 1.7e-09 67.0 45 62.2
FAN22G0068 Fragaria x ananassa HOM05D003414 ORTHO05D003913 1.7e-09 67.0 45 57.8
Nn3g18717 Nelumbo nucifera HOM05D003414 ORTHO05D003913 1.7e-09 67.0 46 58.7
Actinidia13495 Actinidia chinensis HOM05D003414 ORTHO05D003913 2.2e-09 66.6 45 64.4
Dinv29446 Davidia involucrata HOM05D003414 ORTHO05D003913 2.2e-09 66.6 46 58.7
Migut.L01464 Erythranthe guttata HOM05D003414 ORTHO05D003913 2.2e-09 66.6 45 60.0
Nitab4.5_0000570g0070 Nicotiana tabacum HOM05D003414 ORTHO05D003913 2.2e-09 66.6 46 63.0
TPR.G21092 Trifolium pratense HOM05D003414 ORTHO05D003913 2.2e-09 66.6 46 58.7
AUR62027450 Chenopodium quinoa HOM05D003414 ORTHO05D003913 2.9e-09 66.2 46 56.5
Cc01_g10380 Coffea canephora HOM05D003414 ORTHO05D003913 2.9e-09 66.2 46 56.5
FAN07G0063 Fragaria x ananassa HOM05D003414 ORTHO05D003913 2.9e-09 66.2 45 55.6
Glyma.02G036200 Glycine max HOM05D003414 ORTHO05D003913 2.9e-09 66.2 45 60.0
Peaxi162Scf00086g00329 Petunia axillaris HOM05D003414 ORTHO05D003913 2.9e-09 66.2 46 65.2
PGSC0003DMG400000451 Solanum tuberosum HOM05D003414 ORTHO05D003913 2.9e-09 66.2 46 58.7
VMungo1215G2070 Vigna mungo HOM05D003414 ORTHO05D003913 2.9e-09 66.2 45 60.0
Aqoxy3G02886 Aquilegia oxysepala HOM05D003414 ORTHO05D003913 3.8e-09 65.9 44 59.1
CAN.G546.30 Capsicum annuum HOM05D003414 ORTHO05D003913 3.8e-09 65.9 46 58.7
Duzib205G0939 Durio zibethinus HOM05D003414 ORTHO05D003913 3.8e-09 65.9 46 58.7
Glyma.08G284800 Glycine max HOM05D003414 ORTHO05D003913 3.8e-09 65.9 46 58.7
Sopen03g031530 Solanum pennellii HOM05D003414 ORTHO05D003913 3.8e-09 65.9 46 58.7
CSS0045981 Camellia sinensis var. sinensis HOM05D003414 ORTHO05D003913 6.5e-09 65.1 45 57.8
AUR62031250 Chenopodium quinoa HOM05D003414 ORTHO05D003913 6.5e-09 65.1 46 54.3
Peaxi162Scf00086g00133 Petunia axillaris HOM05D003414 ORTHO05D003913 6.5e-09 65.1 46 58.7
Sed0009810 Sechium edule HOM05D003414 ORTHO05D003913 6.5e-09 65.1 45 57.8
HPP92_005090 Vanilla planifolia HOM05D003414 ORTHO05D003913 8.5e-09 64.7 45 62.2
Ca_03139_v3 Cicer arietinum L. HOM05D003414 ORTHO05D003913 1.1e-08 64.3 46 58.7
Medtr5g033930 Medicago truncatula HOM05D003414 ORTHO05D003913 1.1e-08 64.3 46 56.5
Nitab4.5_0004438g0070 Nicotiana tabacum HOM05D003414 ORTHO05D003913 1.1e-08 64.3 45 62.2
Psat2g102320 Pisum sativum HOM05D003414 ORTHO05D003913 1.1e-08 64.3 46 56.5
Solyc11g043150.2 Solanum lycopersicum HOM05D003414 ORTHO05D003913 1.1e-08 64.3 46 54.3
Sopen11g019580 Solanum pennellii HOM05D003414 ORTHO05D003913 1.1e-08 64.3 46 54.3
Haze_24262 Corylus avellana HOM05D005872 ORTHO05D008133 1.5e-08 63.9 68 60.3
FvH4_4g10641 Fragaria vesca HOM05D003414 ORTHO05D003913 1.5e-08 63.9 45 53.3
Glyma.01G029000 Glycine max HOM05D003414 ORTHO05D003913 1.5e-08 63.9 45 57.8
Gohir.A03G000026 Gossypium hirsutum HOM05D003414 ORTHO05D003913 1.5e-08 63.9 46 60.9
Gohir.D03G176800 Gossypium hirsutum HOM05D003414 ORTHO05D003913 1.5e-08 63.9 46 60.9
Gorai.003G186100 Gossypium raimondii HOM05D003414 ORTHO05D003913 1.5e-08 63.9 46 60.9
Hma1.2p1_0160F.1_g071100 Hydrangea macrophylla HOM05D003414 ORTHO05D003913 1.5e-08 63.9 45 55.6
Sed0022906 Sechium edule HOM05D005872 ORTHO05D008133 1.5e-08 63.9 64 53.1
Sc12g0005240 Simmondsia chinensis HOM05D003414 ORTHO05D003913 1.5e-08 63.9 46 54.3
SGA_v2.0_scaffold63G21706 Striga asiatica HOM05D003414 ORTHO05D003913 1.5e-08 63.9 45 53.3
Lj2A165T38 Lonicera japonica HOM05D003414 ORTHO05D003913 1.9e-08 63.5 46 54.3
MBI10_g27995_MAGBIO Magnolia biondii HOM05D003414 ORTHO05D003913 1.9e-08 63.5 45 57.8
Phvul.002G064800 Phaseolus vulgaris HOM05D003414 ORTHO05D003913 1.9e-08 63.5 45 57.8
Prupe.4G272800 Prunus persica HOM05D003414 ORTHO05D003913 1.9e-08 63.5 45 57.8
RcHm_v2.0_Chr7g0219271 Rosa chinensis HOM05D003414 ORTHO05D003913 1.9e-08 63.5 45 55.6
ATR0199G007 Amborella trichopoda HOM05D003414 ORTHO05D003913 2.5e-08 63.2 45 55.6
MELO3C025869.2 Cucumis melo HOM05D005872 ORTHO05D008133 3.2e-08 62.8 65 52.3
PSO063G3439 Papaver somniferum HOM05D003414 ORTHO05D003913 3.2e-08 62.8 45 48.9
Hund02753 Selenicereus undatus HOM05D003414 ORTHO05D003913 3.2e-08 62.8 46 52.2
PSO832G1583 Papaver somniferum HOM05D003414 ORTHO05D003913 4.2e-08 62.4 45 48.9
RcHm_v2.0_Chr4g0406261 Rosa chinensis HOM05D003414 ORTHO05D003913 4.2e-08 62.4 45 55.6
Cfa011659 Carpinus fangiana HOM05D005872 ORTHO05D008133 5.5e-08 62.0 68 58.8
Sed0017421 Sechium edule HOM05D003414 ORTHO05D003913 5.5e-08 62.0 42 61.9
Pp3c4_20930 Physcomitrium patens HOM05D003414 ORTHO05D003913 7.2e-08 61.6 44 52.3
unitig_22.g6429 Utricularia gibba HOM05D003414 ORTHO05D003913 9.4e-08 61.2 47 48.9
CiPaw.14G061000 Carya illinoinensis HOM05D005872 ORTHO05D008133 1.2e-07 60.8 67 55.2
Duzib168G1043 Durio zibethinus HOM05D005872 ORTHO05D008133 1.6e-07 60.5 66 59.1
GSVIVG01007725001 Vitis vinifera HOM05D003414 ORTHO05D003913 1.6e-07 60.5 46 52.2
RcHm_v2.0_Chr2g0115401 Rosa chinensis HOM05D003414 ORTHO05D003913 2.1e-07 60.1 45 51.1
SalBow8G5473 Salvia bowleyana HOM05D003414 ORTHO05D003913 2.1e-07 60.1 45 51.1
EL10Ac5g10731 Beta vulgaris HOM05D003414 ORTHO05D003913 3.6e-07 59.3 82 39.0
FvH4_3g28340 Fragaria vesca HOM05D003414 ORTHO05D003913 6.1e-07 58.5 45 48.9
Dinv14463 Davidia involucrata HOM05D005872 ORTHO05D008133 8.0e-07 58.2 70 50.0
Atru.chr3.4076 Acer truncatum HOM05D005872 ORTHO05D008133 1.0e-06 57.8 64 57.8
MD06G1037800 Malus domestica HOM05D003414 ORTHO05D003913 1.0e-06 57.8 45 55.6
Prupe.6G060600 Prunus persica HOM05D005872 ORTHO05D008133 1.0e-06 57.8 67 56.7
SMO116G0362 Selaginella moellendorffii HOM05D003414 ORTHO05D003913 1.0e-06 57.8 41 58.5
FAN11G3592 Fragaria x ananassa HOM05D003414 ORTHO05D003913 1.4e-06 57.4 45 46.7
Potri.006G221100 Populus trichocarpa HOM05D005872 ORTHO05D008133 1.4e-06 57.4 62 59.7
ClCG02G019690 Citrullus lanatus HOM05D005872 ORTHO05D008133 1.8e-06 57.0 65 49.2
Os08g0524000 Oryza sativa ssp. japonica HOM05D003414 ORTHO05D003913 1.8e-06 57.0 45 51.1
Zm00001eb178650 Zea mays HOM05D003414 ORTHO05D003913 1.8e-06 57.0 45 48.9
DCAR_008345 Daucus carota HOM05D003414 ORTHO05D003913 2.3e-06 56.6 46 50.0
Hund09448 Selenicereus undatus HOM05D003414 ORTHO05D003913 2.3e-06 56.6 46 45.7
Gorai.004G006900 Gossypium raimondii HOM05D005872 ORTHO05D008133 3.0e-06 56.2 68 57.4
Lj6A808T47 Lonicera japonica HOM05D003414 ORTHO05D003913 3.0e-06 56.2 39 64.1
PGR119G2098 Punica granatum HOM05D005872 ORTHO05D008133 3.0e-06 56.2 65 56.9
FAN25G3364 Fragaria x ananassa HOM05D003414 ORTHO05D003913 4.0e-06 55.8 45 46.7
Sabra06G0170900 Salix brachista HOM05D005872 ORTHO05D008133 4.0e-06 55.8 62 59.7
Gohir.D08G012800 Gossypium hirsutum HOM05D005872 ORTHO05D008133 5.2e-06 55.5 68 55.9
Os06g0473100 Oryza sativa ssp. japonica HOM05D003414 ORTHO05D003913 5.2e-06 55.5 45 51.1
SEGI_26072 Sequoiadendron giganteum HOM05D003414 ORTHO05D003913 5.2e-06 55.5 46 47.8
Gohir.A08G002100 Gossypium hirsutum HOM05D005872 ORTHO05D008133 8.8e-06 54.7 66 54.5


User provided reference genes

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