Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.8e-162 575.9 298 100.0
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.1e-109 399.1 326 71.5
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 2.6e-92 342.8 313 65.8
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.0e-80 302.8 326 59.2
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.5e-79 300.4 329 58.4
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 4.1e-77 292.4 311 58.8
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.7e-71 271.9 351 53.8
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.7e-70 270.4 322 56.8
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.7e-70 270.4 322 56.8
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.1e-66 257.7 352 49.7
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 2.7e-65 253.1 303 55.1
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 2.7e-65 253.1 301 55.5
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.7e-62 243.8 302 54.3
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.7e-62 243.8 302 54.3
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.7e-62 243.8 302 54.3
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 3.7e-62 242.7 348 50.3
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 3.7e-62 242.7 348 50.3
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.0e-59 234.6 299 50.8
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.8e-59 232.6 309 51.5
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 5.0e-59 232.3 348 48.6
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.0e-51 208.0 257 52.5
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.1e-49 198.7 366 43.4
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 4.2e-42 176.0 339 39.8
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 3.0e-40 169.9 320 38.1
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 9.8e-39 164.9 335 36.4
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.1e-37 161.4 348 35.9
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.4e-37 161.0 369 36.9
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.4e-37 160.2 311 37.0
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.4e-37 159.1 315 39.0
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.4e-37 159.1 320 39.4
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 7.0e-37 158.7 356 36.2
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 9.2e-37 158.3 356 37.4
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 9.2e-37 158.3 340 36.5
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.2e-36 157.9 311 36.7
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 4.5e-36 156.0 356 36.0
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 4.5e-36 156.0 347 35.7
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 4.5e-36 156.0 334 36.8
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 7.7e-36 155.2 356 34.6
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.3e-35 154.5 306 38.6
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 2.9e-35 153.3 354 36.2
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.9e-35 153.3 350 34.3
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.1e-34 151.4 329 35.9
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.5e-34 151.0 359 35.9
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.5e-34 151.0 366 34.7
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.9e-34 150.6 323 36.2
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.9e-34 150.6 306 37.9
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.9e-34 150.6 317 36.6
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 2.5e-34 150.2 311 35.7
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 4.3e-34 149.4 323 36.2
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 5.6e-34 149.1 332 35.5
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 7.3e-34 148.7 333 35.7
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 7.3e-34 148.7 306 35.3
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.2e-33 147.9 368 32.1
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 2.1e-33 147.1 325 35.1
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 2.8e-33 146.7 353 34.3
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 6.1e-33 145.6 160 54.4
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 8.0e-33 145.2 280 38.6
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.4e-32 144.4 315 34.9
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.4e-32 144.4 170 47.6
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.8e-32 144.1 274 36.9
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.8e-32 144.1 274 36.1
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.0e-32 143.3 316 35.1
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 5.2e-32 142.5 315 36.2
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 5.2e-32 142.5 152 53.9
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 6.8e-32 142.1 332 35.8
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 6.8e-32 142.1 349 35.2
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 8.9e-32 141.7 328 35.7
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.2e-31 141.4 158 52.5
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.5e-31 141.0 345 35.7
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 2.0e-31 140.6 308 36.7
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 2.0e-31 140.6 124 56.5
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 2.6e-31 140.2 359 33.4
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 3.4e-31 139.8 314 35.4
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.4e-31 139.8 274 38.3
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 3.4e-31 139.8 301 34.9
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 3.4e-31 139.8 314 34.4
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 4.4e-31 139.4 309 34.6
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.4e-31 139.4 116 59.5
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 5.7e-31 139.0 172 48.8
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 7.5e-31 138.7 276 37.3
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 9.8e-31 138.3 255 38.4
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.3e-30 137.9 333 34.2
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 1.3e-30 137.9 319 34.2
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.7e-30 137.5 118 59.3
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.7e-30 137.5 144 51.4
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 2.9e-30 136.7 323 34.4
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 4.9e-30 136.0 182 44.0
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 4.9e-30 136.0 315 36.2
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 8.3e-30 135.2 228 40.8
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.8e-29 134.0 378 31.2
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.8e-29 134.0 158 51.3
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.4e-29 133.7 355 33.5
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 9.2e-29 131.7 226 39.4
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.2e-28 131.3 326 32.8
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.7e-28 130.2 322 32.3
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 2.7e-28 130.2 390 31.5
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.9e-28 129.0 178 44.4
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.9e-28 129.0 325 33.5
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.9e-28 129.0 316 35.1
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 7.8e-28 128.6 182 42.9
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.7e-27 127.5 172 47.7
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.7e-27 127.5 126 54.0
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.3e-27 127.1 361 30.5
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.3e-27 127.1 316 35.1
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 2.3e-27 127.1 121 52.1
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 3.9e-27 126.3 307 33.2
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.9e-27 126.3 181 47.5
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.9e-27 126.3 174 45.4
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.5e-26 124.4 331 29.9
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 1.9e-26 124.0 140 50.0
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 4.3e-26 122.9 183 44.8
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 9.5e-26 121.7 203 41.4
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 2.1e-25 120.6 196 42.3
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.6e-25 119.8 352 29.5
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 4.7e-25 119.4 145 46.2
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.7e-25 119.4 303 33.7
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.7e-25 119.4 159 45.9
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 6.2e-25 119.0 261 33.0
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 6.2e-25 119.0 335 33.4
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.0e-24 118.2 146 47.9
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.4e-24 117.9 399 29.8
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.8e-24 117.5 312 34.0
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 5.2e-24 115.9 324 32.4
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 6.8e-24 115.5 155 43.9
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.0e-23 114.0 130 49.2
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 3.4e-23 113.2 130 49.2
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 7.5e-23 112.1 309 33.7
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 7.5e-23 112.1 200 39.5
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.3e-22 111.3 112 56.2
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.3e-22 111.3 112 56.2
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.7e-22 110.9 112 50.9
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.7e-22 110.9 112 50.9
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 4.9e-22 109.4 106 54.7
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.9e-21 107.5 304 32.6
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.9e-21 107.5 304 32.6
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 4.1e-21 106.3 304 32.6
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 4.1e-21 106.3 301 31.2
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 5.4e-21 105.9 113 50.4
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.7e-20 103.6 283 33.2
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 3.5e-20 103.2 126 44.4
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 4.6e-20 102.8 255 35.3
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 6.0e-20 102.4 255 35.3
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.0e-19 101.7 108 49.1
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.7e-19 100.9 147 43.5
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 5.0e-19 99.4 251 33.9
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 5.0e-19 99.4 211 34.1
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.9e-18 97.4 169 40.2
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 3.3e-18 96.7 105 41.9
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.3e-18 96.3 131 43.5
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 7.3e-18 95.5 156 40.4
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.8e-17 93.6 73 67.1
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 4.7e-17 92.8 138 44.2
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 8.1e-17 92.0 268 32.8
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 8.1e-17 92.0 268 32.8
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.3e-16 90.5 116 46.6
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 5.2e-16 89.4 143 39.9
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 8.9e-16 88.6 108 47.2
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.5e-15 87.8 73 63.0
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 2.0e-15 87.4 138 39.1
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 2.0e-15 87.4 130 40.0
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 2.0e-15 87.4 164 33.5
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 3.4e-15 86.7 270 28.9
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.4e-13 81.3 143 36.4
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.6e-12 77.8 233 30.5
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 6.0e-12 75.9 137 38.7
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.5e-10 71.2 244 29.9
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 2.1e-09 67.4 134 36.6
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.3e-06 58.2 165 29.1
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.9e-06 57.0 42 71.4


User provided reference genes

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