Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G43590 Arabidopsis lyrata HOM05D000786 ORTHO05D006216 3.3e-43 177.9 88 100.0
AT4G09890 Arabidopsis thaliana HOM05D000786 ORTHO05D006216 7.3e-43 176.8 88 98.9
Carub.0006s2842 Capsella rubella HOM05D000786 ORTHO05D006216 1.6e-42 175.6 88 97.7
BcaC04g20992 Brassica carinata HOM05D000786 ORTHO05D006216 2.4e-41 171.8 88 95.5
BcaB01g01430 Brassica carinata HOM05D000786 ORTHO05D006216 4.0e-41 171.0 88 95.5
CARHR260880 Cardamine hirsuta HOM05D000786 ORTHO05D006216 5.3e-41 170.6 88 94.3
Sp6g07600 Schrenkiella parvula HOM05D000786 ORTHO05D006216 5.3e-41 170.6 88 95.5
Thhalv10029196m.g Eutrema salsugineum HOM05D000786 ORTHO05D006216 1.3e-39 166.0 88 90.9
Aa31LG9G12090 Aethionema arabicum HOM05D000786 ORTHO05D006216 5.6e-35 150.6 88 86.4
THA.LOC109116395 Tarenaya hassleriana HOM05D000786 ORTHO05D006216 1.1e-27 126.3 87 77.0
Cpa.g.sc49.82 Carica papaya HOM05D000786 ORTHO05D006216 3.0e-20 101.7 94 56.4
CANSAT25G1840 Cannabis sativa HOM05D000786 ORTHO05D006216 2.5e-19 98.6 91 57.1
Manes.18G094200 Manihot esculenta HOM05D000786 ORTHO05D006216 2.5e-19 98.6 95 58.9
Duzib116G0195 Durio zibethinus HOM05D000786 ORTHO05D006216 7.4e-19 97.1 94 58.5
Potri.005G195800 Populus trichocarpa HOM05D000786 ORTHO05D006216 1.3e-18 96.3 94 57.4
RcHm_v2.0_Chr6g0274371 Rosa chinensis HOM05D000786 ORTHO05D006216 6.3e-18 94.0 94 57.4
Thecc.08G158200 Theobroma cacao HOM05D000786 ORTHO05D006216 8.2e-18 93.6 94 56.4
COL.COLO4_03364 Corchorus olitorius HOM05D000786 ORTHO05D006216 2.4e-17 92.0 83 59.0
Cfa018290 Carpinus fangiana HOM05D000786 ORTHO05D006216 3.1e-17 91.7 94 55.3
Haze_17797 Corylus avellana HOM05D000786 ORTHO05D006216 3.1e-17 91.7 94 55.3
Potri.002G065200 Populus trichocarpa HOM05D000786 ORTHO05D006216 4.1e-17 91.3 83 59.0
QL02p038248 Quercus lobata HOM05D000786 ORTHO05D006216 4.1e-17 91.3 94 56.4
ClCG08G003150 Citrullus lanatus HOM05D000786 ORTHO05D006216 6.9e-17 90.5 94 56.4
FvH4_2g13100 Fragaria vesca HOM05D000786 ORTHO05D006216 9.0e-17 90.1 94 56.4
FAN15G3470 Fragaria x ananassa HOM05D000786 ORTHO05D006216 9.0e-17 90.1 94 56.4
FAN20G2557 Fragaria x ananassa HOM05D000786 ORTHO05D006216 9.0e-17 90.1 94 56.4
FAN24G2413 Fragaria x ananassa HOM05D000786 ORTHO05D006216 9.0e-17 90.1 94 56.4
FAN27G0158 Fragaria x ananassa HOM05D000786 ORTHO05D006216 9.0e-17 90.1 94 56.4
CiPaw.15G013200 Carya illinoinensis HOM05D000786 ORTHO05D006216 1.2e-16 89.7 94 55.3
MELO3C024975.2 Cucumis melo HOM05D000786 ORTHO05D006216 1.2e-16 89.7 94 56.4
CsaV3_6G002840 Cucumis sativus L. HOM05D000786 ORTHO05D006216 1.2e-16 89.7 94 56.4
Prupe.8G039100 Prunus persica HOM05D000786 ORTHO05D006216 1.2e-16 89.7 94 54.3
Ciclev10003573m.g Citrus clementina HOM05D000786 ORTHO05D006216 1.5e-16 89.4 83 60.2
Dinv41045 Davidia involucrata HOM05D000786 ORTHO05D006216 1.5e-16 89.4 86 55.8
Gohir.A02G063100 Gossypium hirsutum HOM05D000786 ORTHO05D006216 2.6e-16 88.6 95 51.6
Medtr1g098310 Medicago truncatula HOM05D000786 ORTHO05D006216 2.6e-16 88.6 94 55.3
Atru.chr13.2022 Acer truncatum HOM05D000786 ORTHO05D006216 3.4e-16 88.2 83 57.8
Dinv25892 Davidia involucrata HOM05D000786 ORTHO05D006216 3.4e-16 88.2 84 58.3
Aqoxy5G02027 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 4.5e-16 87.8 88 53.4
Aqoxy5G02029 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 4.5e-16 87.8 88 53.4
Gohir.D02G068800 Gossypium hirsutum HOM05D000786 ORTHO05D006216 4.5e-16 87.8 94 52.1
Lj5g0026860 Lotus japonicus HOM05D000786 ORTHO05D006216 5.9e-16 87.4 94 51.1
Glyma.20G169300 Glycine max HOM05D000786 ORTHO05D006216 7.7e-16 87.0 94 53.2
GSVIVG01034575001 Vitis vinifera HOM05D000786 ORTHO05D006216 7.7e-16 87.0 93 52.7
CSS0042693 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 1.0e-15 86.7 94 54.3
Gorai.005G077700 Gossypium raimondii HOM05D000786 ORTHO05D006216 1.0e-15 86.7 83 55.4
Glyma.10G222300 Glycine max HOM05D000786 ORTHO05D006216 1.3e-15 86.3 94 53.2
Peaxi162Scf00360g10014 Petunia axillaris HOM05D000786 ORTHO05D006216 2.9e-15 85.1 94 48.9
PGSC0003DMG400025091 Solanum tuberosum HOM05D000786 ORTHO05D006216 2.9e-15 85.1 93 50.5
Nn5g28813 Nelumbo nucifera HOM05D000786 ORTHO05D006216 3.8e-15 84.7 94 51.1
Sabra05G0149300 Salix brachista HOM05D000786 ORTHO05D006216 3.8e-15 84.7 83 55.4
TWI34G1146 Tripterygium wilfordii HOM05D000786 ORTHO05D006216 3.8e-15 84.7 94 52.1
TAR381G0907 Trochodendron aralioides HOM05D000786 ORTHO05D006216 3.8e-15 84.7 94 50.0
Phvul.007G082800 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 5.0e-15 84.3 94 52.1
TPR.G10805 Trifolium pratense HOM05D000786 ORTHO05D006216 5.0e-15 84.3 94 53.2
Eucgr.F02688 Eucalyptus grandis HOM05D000786 ORTHO05D006216 8.5e-15 83.6 93 51.6
Cc10_g15160 Coffea canephora HOM05D000786 ORTHO05D006216 1.1e-14 83.2 83 54.2
Atru.chr4.724 Acer truncatum HOM05D000786 ORTHO05D006216 1.9e-14 82.4 84 51.2
ATR0800G011 Amborella trichopoda HOM05D000786 ORTHO05D006216 1.9e-14 82.4 79 57.0
CSS0019732 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 1.9e-14 82.4 84 51.2
PGR119G2557 Punica granatum HOM05D000786 ORTHO05D006216 1.9e-14 82.4 83 56.6
CAN.G495.6 Capsicum annuum HOM05D000786 ORTHO05D006216 2.5e-14 82.0 95 49.5
Glyma.02G079500 Glycine max HOM05D000786 ORTHO05D006216 3.2e-14 81.6 88 52.3
Actinidia17774 Actinidia chinensis HOM05D000786 ORTHO05D006216 4.2e-14 81.3 84 53.6
Nn1g06009 Nelumbo nucifera HOM05D000786 ORTHO05D006216 4.2e-14 81.3 94 47.9
MBI16_g14985_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 5.5e-14 80.9 83 50.6
Manes.12G145200 Manihot esculenta HOM05D000786 ORTHO05D006216 5.5e-14 80.9 86 50.0
Lsat_1_v5_gn_4_138400 Lactuca sativa HOM05D000786 ORTHO05D006216 7.2e-14 80.5 81 50.6
Sed0000205 Sechium edule HOM05D000786 ORTHO05D006216 7.2e-14 80.5 94 52.1
MD10G1033400 Malus domestica HOM05D000786 ORTHO05D006216 9.4e-14 80.1 82 53.7
Phvul.004G091400 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 1.6e-13 79.3 88 53.4
Sed0024174 Sechium edule HOM05D000786 ORTHO05D006216 1.6e-13 79.3 83 55.4
DCAR_011463 Daucus carota HOM05D000786 ORTHO05D006216 2.1e-13 79.0 78 51.3
Nitab4.5_0000099g0130 Nicotiana tabacum HOM05D000786 ORTHO05D006216 2.7e-13 78.6 92 50.0
Ciclev10026866m.g Citrus clementina HOM05D000786 ORTHO05D006216 3.6e-13 78.2 85 51.8
HanXRQChr15g0493541 Helianthus annuus HOM05D000786 ORTHO05D006216 3.6e-13 78.2 76 51.3
Lsat_1_v5_gn_9_42040 Lactuca sativa HOM05D000786 ORTHO05D006216 4.6e-13 77.8 89 51.7
MSTRG.3817 Avicennia marina HOM05D000786 ORTHO05D006216 6.1e-13 77.4 77 51.9
Migut.L00056 Erythranthe guttata HOM05D000786 ORTHO05D006216 6.1e-13 77.4 77 55.8
Rhsim10G0146600 Rhododendron simsii HOM05D000786 ORTHO05D006216 6.1e-13 77.4 81 51.9
Rhsim10G0147300 Rhododendron simsii HOM05D000786 ORTHO05D006216 6.1e-13 77.4 81 51.9
Lj2g0013103 Lotus japonicus HOM05D000786 ORTHO05D006216 7.9e-13 77.0 88 46.6
Glyma.16G163900 Glycine max HOM05D000786 ORTHO05D006216 1.0e-12 76.6 82 51.2
Hma1.2p1_0529F.1_g173260 Hydrangea macrophylla HOM05D000786 ORTHO05D006216 1.4e-12 76.3 80 53.8
Nitab4.5_0005070g0010 Nicotiana tabacum HOM05D000786 ORTHO05D006216 1.4e-12 76.3 93 48.4
Cc07_g16650 Coffea canephora HOM05D000786 ORTHO05D006216 1.8e-12 75.9 76 51.3
HanXRQChr09g0254011 Helianthus annuus HOM05D000786 ORTHO05D006216 1.8e-12 75.9 76 48.7
Ah.05g168150 Amaranthus hybridus HOM05D000786 ORTHO05D006216 2.3e-12 75.5 80 53.8
Lalb_Chr06g0161691 Lupinus albus HOM05D000786 ORTHO05D006216 2.3e-12 75.5 82 51.2
Potri.007G077500 Populus trichocarpa HOM05D000786 ORTHO05D006216 2.3e-12 75.5 87 46.0
CSS0001280 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 3.0e-12 75.1 78 51.3
Os06g0686600 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D006216 3.0e-12 75.1 57 63.2
VMungo0720G1602 Vigna mungo HOM05D000786 ORTHO05D006216 3.9e-12 74.7 71 54.9
CAN.G1248.27 Capsicum annuum HOM05D000786 ORTHO05D006216 5.1e-12 74.3 76 48.7
Sc16g0004100 Simmondsia chinensis HOM05D000786 ORTHO05D006216 5.1e-12 74.3 81 46.9
unitig_0.g1746 Utricularia gibba HOM05D000786 ORTHO05D006216 5.1e-12 74.3 79 48.1
ClCG01G015870 Citrullus lanatus HOM05D000786 ORTHO05D006216 6.7e-12 73.9 81 50.6
Oeu028354.1 Olea europaea HOM05D000786 ORTHO05D006216 6.7e-12 73.9 80 53.8
Prupe.6G166900 Prunus persica HOM05D000786 ORTHO05D006216 8.8e-12 73.6 86 48.8
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 2.0e-11 72.4 85 45.9
Lalb_Chr19g0130081 Lupinus albus HOM05D000786 ORTHO05D006216 2.5e-11 72.0 82 48.8
SalBow5G2955 Salvia bowleyana HOM05D000786 ORTHO05D006216 2.5e-11 72.0 77 51.9
HPP92_027891 Vanilla planifolia HOM05D000786 ORTHO05D006216 3.3e-11 71.6 82 53.7
Cfa002784 Carpinus fangiana HOM05D000786 ORTHO05D006216 4.3e-11 71.2 85 48.2
FAN19G0145 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.3e-11 71.2 88 44.3
MD15G1335800 Malus domestica HOM05D000786 ORTHO05D006216 4.3e-11 71.2 86 46.5
COL.COLO4_03470 Corchorus olitorius HOM05D000786 ORTHO05D006216 5.7e-11 70.9 88 46.6
FvH4_1g23170 Fragaria vesca HOM05D000786 ORTHO05D006216 5.7e-11 70.9 88 44.3
FAN23G1700 Fragaria x ananassa HOM05D000786 ORTHO05D006216 5.7e-11 70.9 88 44.3
Lalb_Chr08g0238761 Lupinus albus HOM05D000786 ORTHO05D006216 5.7e-11 70.9 83 49.4
MBI19_g15944_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 5.7e-11 70.9 90 46.7
SalBow6G2838 Salvia bowleyana HOM05D000786 ORTHO05D006216 5.7e-11 70.9 94 44.7
Solyc04g051470.1 Solanum lycopersicum HOM05D000786 ORTHO05D006216 5.7e-11 70.9 76 47.4
Sopen04g022850 Solanum pennellii HOM05D000786 ORTHO05D006216 5.7e-11 70.9 76 47.4
HPP92_018298 Vanilla planifolia HOM05D000786 ORTHO05D006216 5.7e-11 70.9 82 53.7
AUR62034855 Chenopodium quinoa HOM05D000786 ORTHO05D006216 7.4e-11 70.5 88 48.9
AUR62044756 Chenopodium quinoa HOM05D000786 ORTHO05D006216 7.4e-11 70.5 88 48.9
QL06p031416 Quercus lobata HOM05D000786 ORTHO05D006216 7.4e-11 70.5 84 47.6
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 9.7e-11 70.1 86 45.3
SGA_v2.0_scaffold34G13633 Striga asiatica HOM05D000786 ORTHO05D006216 9.7e-11 70.1 80 48.8
Haze_25081 Corylus avellana HOM05D000786 ORTHO05D006216 1.3e-10 69.7 85 47.1
FAN26G3223 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.3e-10 69.7 88 43.2
FAN28G3029 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.3e-10 69.7 88 43.2
Oeu015843.1 Olea europaea HOM05D000786 ORTHO05D006216 1.3e-10 69.7 83 44.6
PGSC0003DMG402019696 Solanum tuberosum HOM05D000786 ORTHO05D006216 1.3e-10 69.7 76 46.1
Migut.N03203 Erythranthe guttata HOM05D000786 ORTHO05D006216 2.2e-10 68.9 88 45.5
unitig_747.g21813 Utricularia gibba HOM05D000786 ORTHO05D006216 2.2e-10 68.9 78 46.2
RcHm_v2.0_Chr2g0117891 Rosa chinensis HOM05D000786 ORTHO05D006216 2.8e-10 68.6 88 43.2
CsaV3_6G042150 Cucumis sativus L. HOM05D000786 ORTHO05D006216 6.3e-10 67.4 81 48.1
Zm00001eb225670 Zea mays HOM05D000786 ORTHO05D006216 1.1e-09 66.6 76 46.1
Glyma.06G148000 Glycine max HOM05D000786 ORTHO05D006216 1.8e-09 65.9 83 44.6
CiPaw.03G131800 Carya illinoinensis HOM05D000786 ORTHO05D006216 2.4e-09 65.5 100 42.0
MELO3C007453.2 Cucumis melo HOM05D000786 ORTHO05D006216 2.4e-09 65.5 81 46.9
Sabra05G0071600 Salix brachista HOM05D000786 ORTHO05D006216 2.4e-09 65.5 86 43.0
PSO541G3255 Papaver somniferum HOM05D000786 ORTHO05D006216 5.3e-09 64.3 86 47.7
Sabra07G0065500 Salix brachista HOM05D000786 ORTHO05D006216 5.3e-09 64.3 86 44.2
CiPaw.16G009100 Carya illinoinensis HOM05D000786 ORTHO05D006216 6.9e-09 63.9 66 54.5
CDE04G0685 Ceratophyllum demersum HOM05D000786 ORTHO05D006216 6.9e-09 63.9 82 45.1
SMO172G0046 Selaginella moellendorffii HOM05D000786 ORTHO05D000779 1.5e-08 62.8 78 46.2
Peaxi162Scf00025g00337 Petunia axillaris HOM05D000786 ORTHO05D006216 5.9e-08 60.8 76 47.4
Dinv02076 Davidia involucrata HOM05D000786 ORTHO05D000779 1.1e-06 56.6 45 53.3
Glyma.04G217900 Glycine max HOM05D000786 ORTHO05D006216 1.4e-06 56.2 83 44.6
Zm00001eb273520 Zea mays HOM05D000786 ORTHO05D006216 2.5e-06 55.5 49 51.0
Lsat_1_v5_gn_5_143041 Lactuca sativa HOM05D000786 ORTHO05D000779 4.2e-06 54.7 78 38.5
Mapoly0050s0122 Marchantia polymorpha HOM05D000786 ORTHO05D000779 4.2e-06 54.7 38 57.9
AagrBONN_evm.TU.Sc2ySwM_228.2913 Anthoceros agrestis HOM05D000786 ORTHO05D000779 5.5e-06 54.3 74 40.5
ECA234G0204 Erigeron canadensis HOM05D000786 ORTHO05D000779 5.5e-06 54.3 39 56.4
Actinidia15584 Actinidia chinensis HOM05D001250 ORTHO05D000627 7.2e-06 53.9 39 56.4
AL6G22750 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 7.2e-06 53.9 75 37.3
Lalb_Chr24g0396521 Lupinus albus HOM05D000786 ORTHO05D000779 7.2e-06 53.9 51 49.0
Prupe.3G045700 Prunus persica HOM05D000786 ORTHO05D000779 7.2e-06 53.9 39 53.8
Thecc.09G085500 Theobroma cacao HOM05D000786 ORTHO05D000779 7.2e-06 53.9 51 49.0
unitig_748.g7530 Utricularia gibba HOM05D000786 ORTHO05D000779 7.2e-06 53.9 78 39.7
A10p25790 Brassica napus HOM05D000786 ORTHO05D000779 9.4e-06 53.5 76 35.5
CSS0019123 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 9.4e-06 53.5 38 57.9
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 9.4e-06 53.5 39 56.4
MD09G1189600 Malus domestica HOM05D000786 ORTHO05D000779 9.4e-06 53.5 39 53.8


User provided reference genes

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