Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 0.0e+00 2597.8 1266 100.0
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 0.0e+00 2132.1 1275 82.6
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 0.0e+00 1941.4 1120 85.4
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 0.0e+00 1911.0 1281 75.4
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 0.0e+00 1903.6 1279 74.6
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 0.0e+00 1808.5 1274 72.5
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 0.0e+00 1803.1 1271 72.5
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 0.0e+00 1803.1 1276 72.1
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 0.0e+00 1802.7 1278 72.3
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 0.0e+00 1771.9 1284 70.7
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 0.0e+00 1762.7 1275 71.5
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 0.0e+00 1688.3 1287 67.9
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 0.0e+00 1344.7 1306 55.0
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 2.0e-250 870.2 1373 39.1
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 5.8e-250 868.6 1378 38.8
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 6.2e-244 848.6 1370 38.6
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 3.2e-240 836.3 1378 38.8
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 1.2e-239 834.3 1396 37.1
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 1.5e-234 817.4 537 76.2
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 2.2e-228 797.0 1412 36.8
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 4.5e-226 789.3 1403 36.3
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 7.7e-226 788.5 1384 37.4
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 9.4e-224 781.6 1450 35.7
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 3.6e-223 779.6 1400 37.0
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 3.3e-221 773.1 1400 36.7
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 9.7e-221 771.5 1420 36.2
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.2e-216 756.5 1401 36.3
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 1.0e-214 751.5 1374 36.2
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 1.4e-214 751.1 1369 37.7
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 5.3e-211 739.2 1391 35.9
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 9.1e-211 738.4 1383 34.9
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.2e-208 729.9 1429 35.3
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 7.2e-208 728.8 1366 37.3
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 1.4e-203 714.5 1366 35.2
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 6.5e-201 705.7 1380 34.7
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 5.4e-195 686.0 1366 35.2
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 1.2e-194 684.9 1393 34.2
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 2.0e-194 684.1 1397 33.8
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 2.3e-193 680.6 1407 34.4
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 2.9e-193 680.2 1305 35.7
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 6.6e-193 679.1 1380 34.3
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 1.1e-192 678.3 1429 34.2
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 1.9e-192 677.6 1249 37.1
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 3.0e-190 670.2 1394 33.6
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 8.9e-190 668.7 1359 35.2
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 8.9e-190 668.7 1355 35.0
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 1.8e-187 661.0 1381 34.3
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 4.1e-187 659.8 1385 33.7
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 1.6e-186 657.9 1367 33.5
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 1.1e-184 651.7 1374 33.8
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 1.9e-184 651.0 1371 33.3
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 1.5e-181 641.3 1384 33.4
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 1.4e-179 634.8 1382 32.8
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 3.2e-179 633.6 1382 33.6
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.6e-178 631.3 1356 34.4
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 6.6e-177 625.9 1346 32.1
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 6.6e-177 625.9 1376 33.2
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 1.4e-174 618.2 1394 32.4
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 3.1e-174 617.1 1418 32.1
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 1.7e-172 611.3 1302 32.2
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 6.4e-172 609.4 1383 33.0
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 2.7e-170 604.0 1377 32.3
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 3.1e-166 590.5 1411 32.1
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 1.7e-164 584.7 1355 31.7
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 1.0e-161 575.5 1392 31.4
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 2.1e-159 567.8 1371 32.0
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 8.4e-156 555.8 1231 32.6
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 1.3e-153 548.5 1133 33.9
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 1.1e-150 538.9 1291 30.6
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 2.6e-149 534.3 1364 31.1
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 1.7e-148 531.6 1370 30.3
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.1e-147 528.9 1136 33.7
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 2.4e-142 511.1 1143 32.5
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 2.2e-140 504.6 1187 32.3
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 5.3e-134 483.4 1369 29.3
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 1.3e-132 478.8 1398 30.3
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 2.5e-128 464.5 1071 33.7
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 5.3e-126 456.8 1480 28.5
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 3.4e-125 454.1 1492 28.3
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 2.4e-110 404.8 1347 28.0
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 4.2e-107 394.0 971 30.4
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 7.2e-107 393.3 997 31.3
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 2.7e-106 391.3 836 33.0
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 1.0e-105 389.4 1327 26.5
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 7.5e-96 356.7 944 29.1
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 5.9e-93 347.1 1341 25.4
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 4.7e-90 337.4 397 47.4
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 4.4e-88 330.9 633 36.2
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 4.8e-87 327.4 458 42.1
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 1.1e-83 316.2 398 46.0
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 2.4e-78 298.5 435 40.0
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 5.4e-78 297.4 352 49.1
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 1.1e-75 289.7 805 30.2
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 3.4e-72 278.1 360 43.6
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.4e-65 256.1 834 27.0
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.9e-62 245.7 359 43.7
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 9.2e-62 243.4 385 39.0
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.1e-59 236.5 268 49.6
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 2.0e-56 225.7 289 41.9
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 3.2e-54 218.4 458 33.0
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 9.5e-51 206.8 239 49.4
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 3.2e-46 191.8 354 34.7
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 7.1e-46 190.7 1259 22.5
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.1e-41 176.8 660 24.4
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 1.3e-39 169.9 271 35.4
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.6e-37 162.9 203 47.3
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 9.6e-35 153.7 427 28.8
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 2.8e-34 152.1 414 27.3
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 1.5e-32 146.4 274 30.7
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 1.0e-28 133.7 578 25.3
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 2.3e-28 132.5 142 49.3
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 4.8e-26 124.8 311 31.5
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 2.4e-25 122.5 345 31.3
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.2e-21 110.2 207 30.0
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.1e-19 103.6 210 31.0
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 2.5e-19 102.4 164 32.9
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 3.4e-16 92.0 197 31.0
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 1.8e-12 79.7 57 59.6
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 3.0e-12 79.0 138 32.6
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 3.3e-11 75.5 261 21.5
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 2.1e-10 72.8 49 63.3
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 4.8e-10 71.6 209 27.8
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 6.3e-10 71.2 184 27.7


User provided reference genes

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