Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 4.7e-187 658.3 501 100.0
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 5.7e-148 528.5 504 82.5
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 1.4e-127 460.7 516 73.4
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 3.7e-123 446.0 436 76.4
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 2.2e-120 436.8 435 63.2
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.0e-105 387.1 502 61.4
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 4.5e-105 386.0 442 64.3
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 1.6e-102 377.5 449 62.6
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 3.2e-90 336.7 434 50.9
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 5.6e-87 325.9 433 53.6
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 2.9e-83 313.5 426 49.8
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 3.7e-83 313.2 452 45.1
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.1e-82 311.6 452 48.7
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.6e-81 307.8 433 49.2
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.5e-79 301.2 433 48.0
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 3.3e-79 300.1 426 47.4
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 2.1e-78 297.4 444 48.9
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 2.8e-78 297.0 444 48.9
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 2.8e-78 297.0 442 49.3
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 4.7e-78 296.2 492 50.4
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 6.2e-78 295.8 444 47.1
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 6.2e-78 295.8 444 45.0
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 1.4e-77 294.7 435 47.4
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 1.8e-77 294.3 439 47.4
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 1.8e-77 294.3 443 44.2
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 4.4e-76 289.7 446 47.3
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 7.6e-76 288.9 435 57.0
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 1.3e-75 288.1 459 49.0
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 2.2e-75 287.3 439 44.2
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 2.9e-75 287.0 439 52.4
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 4.9e-75 286.2 441 53.3
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 8.3e-75 285.4 437 41.4
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 8.3e-75 285.4 486 44.0
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 3.2e-74 283.5 451 43.2
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 5.4e-74 282.7 445 43.1
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 9.2e-74 282.0 438 47.7
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 9.2e-74 282.0 416 44.5
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 4.6e-73 279.6 478 49.6
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.0e-72 278.5 452 48.0
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.3e-72 278.1 489 40.1
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.7e-72 277.7 441 43.1
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 2.3e-72 277.3 427 46.4
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 2.3e-72 277.3 449 43.0
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 3.0e-72 276.9 434 47.7
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 3.9e-72 276.6 487 39.8
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 3.3e-71 273.5 424 46.2
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 3.6e-70 270.0 431 41.5
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 4.7e-70 269.6 463 40.2
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 6.2e-70 269.2 474 49.2
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 6.2e-70 269.2 435 41.4
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 1.8e-69 267.7 439 44.9
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 1.8e-69 267.7 456 42.8
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.8e-69 267.7 445 41.8
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 3.1e-69 266.9 422 52.1
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 6.8e-69 265.8 446 45.1
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 1.2e-68 265.0 455 47.0
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 5.8e-68 262.7 444 41.0
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.8e-68 262.7 487 38.8
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.3e-67 261.5 455 49.7
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 1.7e-67 261.2 422 46.2
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 2.9e-67 260.4 441 47.8
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.4e-66 258.1 446 46.0
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 9.3e-66 255.4 520 40.2
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 1.6e-65 254.6 416 45.4
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 3.5e-65 253.4 439 46.2
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 3.5e-65 253.4 514 42.6
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 4.6e-65 253.1 406 41.6
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 6.0e-65 252.7 432 39.8
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 6.0e-65 252.7 427 42.4
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.7e-64 251.1 452 45.1
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 2.3e-64 250.8 449 39.4
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 9.6e-63 245.4 408 42.9
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 1.4e-61 241.5 417 42.2
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 4.0e-61 240.0 428 39.5
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 4.0e-61 240.0 427 38.9
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 5.3e-61 239.6 431 44.8
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 6.9e-61 239.2 456 38.8
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 9.0e-61 238.8 456 38.8
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 2.9e-59 233.8 388 40.5
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 1.4e-58 231.5 428 40.9
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 4.2e-58 229.9 418 37.3
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 2.7e-57 227.3 436 38.5
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.5e-57 226.9 433 38.1
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 7.8e-57 225.7 422 37.4
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 7.8e-57 225.7 423 39.5
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 7.8e-57 225.7 431 39.0
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 1.7e-56 224.6 450 34.4
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 6.6e-56 222.6 453 41.9
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 7.3e-55 219.2 403 40.7
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 2.8e-54 217.2 384 44.5
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 2.8e-54 217.2 461 35.4
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 5.3e-53 213.0 431 39.9
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 1.2e-52 211.8 567 38.1
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 3.8e-51 206.8 405 37.5
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 4.9e-51 206.5 383 45.7
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 4.2e-50 203.4 300 48.0
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 7.1e-50 202.6 426 37.1
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 6.0e-49 199.5 318 43.4
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 1.0e-48 198.7 331 50.8
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.3e-48 198.4 418 39.5
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 3.9e-48 196.8 427 36.1
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 4.3e-47 193.4 449 36.7
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 7.4e-47 192.6 486 30.5
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 8.1e-46 189.1 321 43.9
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 3.1e-45 187.2 416 35.8
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.0e-44 184.5 390 37.4
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.6e-44 184.1 388 41.0
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.4e-44 183.7 432 38.2
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 7.6e-44 182.6 269 45.0
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.9e-43 179.9 422 42.4
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 4.6e-33 146.7 358 47.8
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.3e-31 140.2 125 64.8
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 1.1e-29 135.6 117 63.2
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.0e-28 131.3 98 73.5
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 3.4e-28 130.6 265 38.5
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 2.9e-27 127.5 484 36.6
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 2.9e-27 127.5 442 32.8
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 4.2e-26 123.6 238 35.7
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 6.7e-24 116.3 473 31.5
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.1e-23 115.5 217 40.6
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 3.3e-23 114.0 183 41.5
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 3.7e-22 110.5 430 30.9
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 5.9e-20 103.2 202 36.1
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 4.2e-18 97.1 108 50.9
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.3e-16 91.3 78 60.3
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.3e-16 91.3 425 31.3
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 9.7e-15 85.9 76 59.2
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 1.8e-13 81.6 273 33.3
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 3.5e-12 77.4 418 25.1
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 1.5e-10 72.0 63 61.9
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 6.1e-09 66.6 320 39.7
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.0e-08 65.9 65 53.8
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.8e-08 65.1 67 46.3
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 5.2e-08 63.5 95 42.1
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.5e-07 62.0 56 50.0
Cre12.g539750 Chlamydomonas reinhardtii HOM05D005355 ORTHO05D006591 1.7e-06 58.5 87 42.5


User provided reference genes

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