Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 4.2e-231 804.3 392 100.0
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 8.4e-224 780.0 393 96.9
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 2.7e-222 775.0 392 95.9
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.8e-210 735.7 396 90.2
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.4e-207 726.1 386 90.2
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 2.5e-207 725.3 390 90.5
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-206 723.0 390 90.3
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 2.1e-206 722.2 392 89.0
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 7.9e-206 720.3 388 89.9
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 9.7e-204 713.4 388 88.9
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 9.7e-204 713.4 388 88.9
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 2.2e-203 712.2 393 89.1
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 5.3e-202 707.6 388 88.1
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 7.0e-202 707.2 388 88.4
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.5e-199 699.5 392 87.5
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 7.5e-196 687.2 367 87.7
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 7.5e-196 687.2 367 87.7
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 2.7e-190 668.7 386 83.9
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-185 653.3 367 84.7
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 5.6e-175 617.8 383 77.0
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 3.7e-171 605.1 378 76.2
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 6.4e-171 604.4 384 74.7
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.8e-170 602.8 383 74.4
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 7.8e-169 597.4 370 75.9
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 2.3e-168 595.9 376 74.7
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 6.6e-168 594.3 362 78.2
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 8.6e-168 594.0 388 73.7
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 8.6e-168 594.0 366 76.0
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.6e-168 594.0 370 75.4
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.1e-167 593.6 370 75.7
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 9.5e-167 590.5 398 72.6
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.6e-166 589.7 380 73.7
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.1e-166 589.3 359 77.4
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 4.7e-166 588.2 383 73.9
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 8.0e-166 587.4 394 73.9
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.4e-165 586.6 395 71.6
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.4e-165 586.6 367 74.9
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 3.1e-165 585.5 388 72.9
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.6e-164 582.4 385 73.8
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 4.4e-164 581.6 367 75.7
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 5.8e-164 581.3 395 71.4
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 9.8e-164 580.5 399 71.4
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 8.3e-163 577.4 353 78.2
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.1e-162 577.0 344 77.9
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 2.4e-162 575.9 346 76.9
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 3.2e-162 575.5 376 73.1
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 9.2e-162 573.9 338 80.8
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.2e-161 573.5 363 74.4
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.6e-161 573.2 342 78.1
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.6e-161 573.2 345 77.7
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 2.0e-161 572.8 338 79.9
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 2.0e-161 572.8 369 75.1
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 2.7e-161 572.4 363 76.0
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.7e-161 572.4 371 74.9
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 7.8e-161 570.9 363 75.5
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 5.0e-160 568.2 383 71.5
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.6e-160 567.8 360 74.2
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.5e-159 566.6 377 72.9
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.5e-159 566.6 377 72.9
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 2.5e-159 565.8 359 74.4
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 5.6e-159 564.7 363 73.3
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.7e-158 561.6 343 76.7
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 1.8e-157 559.7 361 75.1
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 3.1e-157 558.9 360 73.6
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 5.2e-157 558.1 388 71.1
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.3e-155 553.5 360 73.3
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.7e-155 553.1 382 68.8
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 2.2e-155 552.7 362 70.4
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 4.1e-154 548.5 377 69.0
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.1e-153 546.2 362 69.6
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.1e-153 546.2 386 72.5
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 3.5e-153 545.4 365 70.1
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 6.0e-153 544.7 362 69.6
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.0e-152 543.9 339 74.6
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.3e-152 543.5 381 70.6
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.9e-152 542.0 368 69.6
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 3.3e-151 538.9 354 72.3
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 3.3e-151 538.9 344 75.0
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 5.6e-151 538.1 368 71.2
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 5.6e-151 538.1 387 67.2
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 7.3e-151 537.7 339 73.7
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.6e-150 536.6 351 72.9
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 1.6e-150 536.6 373 67.6
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 2.1e-150 536.2 391 65.7
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.6e-150 535.4 362 71.0
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.1e-149 533.9 355 71.5
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.1e-149 533.9 320 76.6
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 4.0e-149 531.9 398 65.3
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 4.0e-149 531.9 366 69.4
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.2e-149 531.6 360 70.8
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.5e-148 530.0 369 67.8
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.5e-148 530.0 363 68.0
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 2.6e-148 529.3 363 68.3
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 3.4e-148 528.9 358 69.0
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 9.9e-148 527.3 333 72.4
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.4e-146 523.5 398 63.1
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.4e-146 523.5 345 71.9
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 4.1e-146 521.9 366 68.6
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.2e-145 520.4 362 68.2
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 2.1e-145 519.6 368 69.0
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 1.0e-144 517.3 365 69.6
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.7e-144 516.5 386 66.6
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.9e-144 515.4 309 75.7
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.1e-144 515.0 325 74.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.1e-143 513.8 344 69.8
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 5.6e-143 511.5 384 65.1
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 7.3e-143 511.1 306 75.8
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 9.6e-143 510.8 359 66.9
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.2e-142 510.4 379 64.6
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.5e-140 503.4 344 69.8
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.2e-139 499.6 363 65.6
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 2.4e-138 496.1 335 71.0
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.4e-138 496.1 382 63.1
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 6.9e-133 478.0 362 63.8
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 1.4e-130 470.3 381 61.2
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.2e-130 469.2 348 64.9
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 7.1e-130 468.0 396 58.8
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 2.7e-129 466.1 336 64.9
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.5e-127 460.3 321 66.7
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 4.0e-125 452.2 371 60.9
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.4e-124 449.1 302 69.2
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.9e-123 446.0 352 61.9
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.9e-122 443.4 395 56.5
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.7e-121 439.5 282 73.8
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.9e-119 433.3 369 59.3
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.2e-118 428.3 255 76.9
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.5e-113 412.5 304 65.1
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 4.6e-113 412.1 327 58.1
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.0e-112 411.0 355 58.0
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.6e-110 403.7 371 55.8
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 5.3e-109 398.7 315 62.9
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.9e-101 371.7 198 85.9
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 1.1e-98 364.4 206 81.6
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.5e-95 354.0 219 78.1
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 2.8e-94 349.7 201 79.6
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 9.1e-93 344.7 177 90.4
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 5.0e-91 339.0 234 71.8
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 9.4e-90 334.7 255 63.1
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 6.5e-83 312.0 231 64.5
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 2.7e-81 306.6 400 41.5
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-73 281.2 229 60.7
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 8.0e-73 278.5 230 61.7
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 2.2e-70 270.4 304 44.4
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.8e-69 267.3 345 40.3
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 2.5e-66 256.9 221 57.9
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 4.1e-61 239.6 356 37.4
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 2.1e-57 227.3 197 56.9
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 1.4e-53 214.5 349 36.7
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 4.0e-48 196.4 125 76.0
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.0e-35 153.7 148 54.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 6.2e-33 146.0 142 54.2
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.9e-31 138.7 116 61.2
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.0e-24 116.7 65 80.0
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.1e-21 108.6 57 86.0
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 8.4e-06 55.8 43 62.8


User provided reference genes

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