Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G41320 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 3.5e-86 321.6 166 100.0
AL1G58110 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 2.3e-85 318.9 166 98.8
AL8G10620 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 1.1e-84 316.6 166 98.2
AL5G19890 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 4.3e-84 314.7 166 97.0
AL5G20070 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 4.3e-84 314.7 166 97.0
AL3G46750 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 9.5e-84 313.5 166 97.0
AL9U10530 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 3.6e-83 311.6 166 97.0
AL3G51240 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 1.3e-80 303.1 166 94.0
AL8G20120 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 4.9e-64 248.1 134 92.5
AL3G12590 Arabidopsis lyrata HOM05D010286 ORTHO05D012603 7.6e-49 197.6 162 63.6
AL3G51480 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 4.3e-44 181.8 162 59.9
AL4G17480 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 2.2e-40 169.5 95 85.3
BcaC06g34090 Brassica carinata HOM05D007774 ORTHO05D000309 3.3e-28 129.0 120 56.7
Carub.0007s3110 Capsella rubella HOM05D010286 ORTHO05D000309 9.6e-28 127.5 160 44.4
BcaNung03185 Brassica carinata HOM05D007774 ORTHO05D000309 4.8e-27 125.2 120 55.8
BcaB01g02983 Brassica carinata HOM05D007774 ORTHO05D000309 2.9e-24 115.9 120 53.3
AL8G21820 Arabidopsis lyrata HOM05D007774 ORTHO05D000309 4.3e-20 102.1 115 46.1
Carub.0001s3344 Capsella rubella HOM05D010286 ORTHO05D000309 3.7e-19 99.0 151 39.1
BolC2t09377H Brassica oleracea HOM05D007774 ORTHO05D000309 4.8e-19 98.6 98 54.1
Carub.0029s0002 Capsella rubella HOM05D010286 ORTHO05D011981 4.8e-19 98.6 131 39.7
Carub.0008s0717 Capsella rubella HOM05D010286 ORTHO05D000309 6.3e-19 98.2 140 39.3
BraA02t06986Z Brassica rapa HOM05D007774 ORTHO05D000309 1.8e-18 96.7 118 47.5
Carub.0004s0648 Capsella rubella HOM05D010286 ORTHO05D000309 2.4e-18 96.3 161 37.3
BolC6t36100H Brassica oleracea HOM05D007774 ORTHO05D000309 4.5e-17 92.0 93 54.8
BcaC02g10427 Brassica carinata HOM05D007774 ORTHO05D000309 5.9e-17 91.7 107 46.7
BcaC02g10455 Brassica carinata HOM05D007774 ORTHO05D000309 5.9e-17 91.7 103 52.4
BcaC01g01743 Brassica carinata HOM05D007774 ORTHO05D000309 6.5e-16 88.2 105 50.5
BcaC08g45193 Brassica carinata HOM05D007774 ORTHO05D000309 8.5e-16 87.8 100 49.0
BcaB01g02010 Brassica carinata HOM05D007774 ORTHO05D000309 1.1e-15 87.4 114 43.9
BraA09t41073Z Brassica rapa HOM05D007774 ORTHO05D000309 1.4e-15 87.0 103 47.6
BcaB06g26508 Brassica carinata HOM05D007774 ORTHO05D000309 2.5e-15 86.3 95 48.4
BcaB08g35933 Brassica carinata HOM05D007774 ORTHO05D000309 2.5e-15 86.3 114 43.0
BcaNung05585 Brassica carinata HOM05D007774 ORTHO05D000309 2.5e-15 86.3 114 43.0
BraA02t06821Z Brassica rapa HOM05D001038 ORTHO05D000395 2.5e-15 86.3 91 48.4
BcaB06g27901 Brassica carinata HOM05D007774 ORTHO05D000309 3.2e-15 85.9 101 44.6
BcaB02g11517 Brassica carinata HOM05D007774 ORTHO05D000309 5.5e-15 85.1 96 47.9
BcaB03g16006 Brassica carinata HOM05D007774 ORTHO05D000309 5.5e-15 85.1 99 41.4
BcaB06g26754 Brassica carinata HOM05D007774 ORTHO05D000309 5.5e-15 85.1 96 47.9
BcaB06g27138 Brassica carinata HOM05D007774 ORTHO05D000309 5.5e-15 85.1 96 47.9
Carub.0029s0004 Capsella rubella HOM05D010286 ORTHO05D011981 5.5e-15 85.1 159 32.7
BcaC02g10529 Brassica carinata HOM05D007774 ORTHO05D000309 9.4e-15 84.3 100 48.0
A01p38280 Brassica napus HOM05D001038 ORTHO05D000395 9.4e-15 84.3 89 49.4
BcaB03g16083 Brassica carinata HOM05D007774 ORTHO05D000309 1.2e-14 84.0 114 43.0
BraA02t08177Z Brassica rapa HOM05D007774 ORTHO05D000309 1.2e-14 84.0 100 47.0
BcaB02g11205 Brassica carinata HOM05D007774 ORTHO05D000309 1.6e-14 83.6 96 46.9
BcaB06g26683 Brassica carinata HOM05D007774 ORTHO05D000309 1.6e-14 83.6 96 46.9
BolC4t24443H Brassica oleracea HOM05D007774 ORTHO05D000309 1.6e-14 83.6 107 43.9
BcaB07g33250 Brassica carinata HOM05D007774 ORTHO05D000309 2.1e-14 83.2 101 43.6
BcaB06g27506 Brassica carinata HOM05D007774 ORTHO05D000309 2.7e-14 82.8 96 46.9
BcaC06g36173 Brassica carinata HOM05D007774 ORTHO05D000309 2.7e-14 82.8 99 49.5
BcaB06g26191 Brassica carinata HOM05D007774 ORTHO05D000309 3.6e-14 82.4 100 46.0
BcaB07g33982 Brassica carinata HOM05D007774 ORTHO05D000309 4.6e-14 82.0 105 45.7
BcaB01g02175 Brassica carinata HOM05D007774 ORTHO05D000309 6.1e-14 81.6 101 42.6
BcaB02g11020 Brassica carinata HOM05D007774 ORTHO05D000309 1.4e-13 80.5 118 41.5
BcaC04g20915 Brassica carinata HOM05D007774 ORTHO05D000309 1.4e-13 80.5 118 43.2
BcaC04g20923 Brassica carinata HOM05D007774 ORTHO05D000395 1.4e-13 80.5 100 45.0
BcaB05g24508 Brassica carinata HOM05D001224 ORTHO05D000309 1.8e-13 80.1 83 48.2
BcaC04g22268 Brassica carinata HOM05D007774 ORTHO05D000309 2.3e-13 79.7 118 41.5
C09p37880 Brassica napus HOM05D001038 ORTHO05D000395 2.3e-13 79.7 100 44.0
BolC9t56621H Brassica oleracea HOM05D001038 ORTHO05D000395 2.3e-13 79.7 100 44.0
BcaB02g11463 Brassica carinata HOM05D001224 ORTHO05D000309 6.7e-13 78.2 83 48.2
BolC3t19075H Brassica oleracea HOM05D007774 ORTHO05D000309 6.7e-13 78.2 118 42.4
BcaB06g27418 Brassica carinata HOM05D007774 ORTHO05D000309 8.8e-13 77.8 90 48.9
BcaC08g43835 Brassica carinata HOM05D007774 ORTHO05D000309 8.8e-13 77.8 99 47.5
BcaB08g35546 Brassica carinata HOM05D007774 ORTHO05D000309 1.5e-12 77.0 98 44.9
BcaC01g02929 Brassica carinata HOM05D007774 ORTHO05D000309 2.5e-12 76.3 105 45.7
BcaB06g26646 Brassica carinata HOM05D007774 ORTHO05D000309 4.3e-12 75.5 95 45.3
BcaC06g36128 Brassica carinata HOM05D007774 ORTHO05D000395 7.4e-12 74.7 100 42.0
C07p07480 Brassica napus HOM05D001038 ORTHO05D000395 1.3e-11 73.9 100 41.0
BolC6t37988H Brassica oleracea HOM05D007774 ORTHO05D000309 1.3e-11 73.9 85 47.1
BolC7t41165H Brassica oleracea HOM05D007774 ORTHO05D000309 1.3e-11 73.9 100 41.0
BcaB04g16980 Brassica carinata HOM05D007774 ORTHO05D000309 1.7e-11 73.6 96 45.8
BcaB08g36585 Brassica carinata HOM05D007774 ORTHO05D000309 6.3e-11 71.6 99 42.4
BolC8t49307H Brassica oleracea HOM05D007774 ORTHO05D000309 6.3e-11 71.6 113 40.7
BcaC05g26851 Brassica carinata HOM05D007774 ORTHO05D000309 1.8e-10 70.1 80 50.0
BcaB05g23917 Brassica carinata HOM05D007774 ORTHO05D000309 3.1e-10 69.3 120 39.2
AL7G49570 Arabidopsis lyrata HOM05D010286 ORTHO05D000309 4.1e-10 68.9 49 61.2
BcaC02g09596 Brassica carinata HOM05D007774 ORTHO05D000309 4.1e-10 68.9 117 39.3
BolC5t33238H Brassica oleracea HOM05D007774 ORTHO05D000309 5.3e-10 68.6 69 50.7
BolC8t49310H Brassica oleracea HOM05D007774 ORTHO05D000309 5.3e-10 68.6 99 40.4
AL4G18060 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 9.1e-10 67.8 143 34.3
BcaC06g35818 Brassica carinata HOM05D007774 ORTHO05D000309 1.2e-09 67.4 117 34.2
Psat3g069680 Pisum sativum HOM05D018012 ORTHO05D000309 2.6e-09 66.2 110 36.4
BolC9t53939H Brassica oleracea HOM05D007774 ORTHO05D000309 4.5e-09 65.5 65 52.3
Hma1.2p1_1051F.1_g252070 Hydrangea macrophylla HOM05D008126 ORTHO05D000309 4.5e-09 65.5 62 53.2
BcaB05g23793 Brassica carinata HOM05D007774 ORTHO05D000309 5.9e-09 65.1 85 38.8
BolC2t09463H Brassica oleracea HOM05D007774 ORTHO05D000309 5.9e-09 65.1 65 52.3
BraA09t38926Z Brassica rapa HOM05D009173 ORTHO05D000309 5.9e-09 65.1 105 36.2
Psat0s2572g0080 Pisum sativum HOM05D018012 ORTHO05D000309 5.9e-09 65.1 109 34.9
BcaB02g11450 Brassica carinata HOM05D007774 ORTHO05D000309 7.7e-09 64.7 127 38.6
C09p37560 Brassica napus HOM05D008073 ORTHO05D000309 1.0e-08 64.3 110 39.1
CiPaw.11G105700 Carya illinoinensis HOM05D009850 ORTHO05D011981 1.0e-08 64.3 97 36.1
Eucgr.L01799 Eucalyptus grandis HOM05D001383 ORTHO05D000309 1.3e-08 63.9 96 35.4
Hma1.2p1_0048F.1_g028060 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.7e-08 63.5 117 37.6
Hma1.2p1_1389F.1_g280030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.7e-08 63.5 117 37.6
BcaC04g20956 Brassica carinata HOM05D008073 ORTHO05D000309 2.9e-08 62.8 94 40.4
BolC9t56587H Brassica oleracea HOM05D008073 ORTHO05D000309 2.9e-08 62.8 94 40.4
ECA236G2579 Erigeron canadensis HOM05D001067 ORTHO05D000876 2.9e-08 62.8 80 41.2
Eucgr.L02287 Eucalyptus grandis HOM05D001383 ORTHO05D000309 2.9e-08 62.8 125 31.2
BcaC01g04381 Brassica carinata HOM05D007774 ORTHO05D000309 3.8e-08 62.4 65 50.8
BcaC08g43001 Brassica carinata HOM05D009173 ORTHO05D000309 3.8e-08 62.4 164 31.1
Cfa014980 Carpinus fangiana HOM05D016218 ORTHO05D000309 3.8e-08 62.4 77 35.1
CiPaw.01G013100 Carya illinoinensis HOM05D009850 ORTHO05D011981 3.8e-08 62.4 86 32.6
AL6G38890 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 6.5e-08 61.6 172 29.7
Cfa017775 Carpinus fangiana HOM05D016218 ORTHO05D000309 6.5e-08 61.6 64 39.1
Rhsim01G0020400 Rhododendron simsii HOM05D001383 ORTHO05D000309 8.5e-08 61.2 92 38.0
Eucgr.L02007 Eucalyptus grandis HOM05D001383 ORTHO05D000309 1.1e-07 60.8 117 31.6
SGA_v2.0_scaffold3G01575 Striga asiatica HOM05D011630 ORTHO05D014269 1.1e-07 60.8 57 47.4
CARHR186880 Cardamine hirsuta HOM05D010286 ORTHO05D000309 1.4e-07 60.5 110 31.8
CiPaw.01G053000 Carya illinoinensis HOM05D009850 ORTHO05D011981 1.4e-07 60.5 92 35.9
Cfa012747 Carpinus fangiana HOM05D016218 ORTHO05D000309 1.9e-07 60.1 97 33.0
Cfa020977 Carpinus fangiana HOM05D016218 ORTHO05D000309 2.5e-07 59.7 82 35.4
CiPaw.09G066300 Carya illinoinensis HOM05D009850 ORTHO05D011981 2.5e-07 59.7 72 37.5
Eucgr.E03636 Eucalyptus grandis HOM05D001383 ORTHO05D000309 2.5e-07 59.7 102 36.3
Eucgr.A00047 Eucalyptus grandis HOM05D001383 ORTHO05D000309 3.2e-07 59.3 102 36.3
Lsat_1_v5_gn_1_21820 Lactuca sativa HOM05D011072 ORTHO05D012603 3.2e-07 59.3 91 36.3
Lsat_1_v5_gn_2_53940 Lactuca sativa HOM05D011072 ORTHO05D012603 3.2e-07 59.3 91 36.3
Lsat_1_v5_gn_5_70821 Lactuca sativa HOM05D011072 ORTHO05D012603 3.2e-07 59.3 91 36.3
Lsat_1_v5_gn_7_45761 Lactuca sativa HOM05D011072 ORTHO05D012603 3.2e-07 59.3 91 36.3
Lsat_1_v5_gn_7_61781 Lactuca sativa HOM05D011072 ORTHO05D012603 3.2e-07 59.3 91 36.3
Peaxi162Scf00562g00026 Petunia axillaris HOM05D004040 ORTHO05D000309 3.2e-07 59.3 81 37.0
Hma1.2p1_0362F.1_g136570 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.2e-07 58.9 84 40.5
Hma1.2p1_1041F.1_g251030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.2e-07 58.9 62 51.6
Lsat_1_v5_gn_2_25761 Lactuca sativa HOM05D021679 ORTHO05D022849 4.2e-07 58.9 81 39.5
AUR62013972 Chenopodium quinoa HOM05D008388 ORTHO05D000309 5.5e-07 58.5 84 36.9
Medtr5g021030 Medicago truncatula HOM05D001383 ORTHO05D000309 5.5e-07 58.5 94 37.2
CiPaw.13G125800 Carya illinoinensis HOM05D009850 ORTHO05D011981 7.2e-07 58.2 101 35.6
Eucgr.L02571 Eucalyptus grandis HOM05D001383 ORTHO05D000309 7.2e-07 58.2 62 46.8
Hma1.2p1_2569F.1_g324543 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 7.2e-07 58.2 88 34.1
Medtr2g008290 Medicago truncatula HOM05D001383 ORTHO05D000309 7.2e-07 58.2 94 37.2
Peaxi162Scf00756g00016 Petunia axillaris HOM05D001383 ORTHO05D000309 7.2e-07 58.2 73 38.4
TPR.G31023 Trifolium pratense HOM05D019053 ORTHO05D020883 7.2e-07 58.2 100 32.0
A07p31530 Brassica napus HOM05D008073 ORTHO05D000309 9.4e-07 57.8 139 30.9
Cfa010691 Carpinus fangiana HOM05D016218 ORTHO05D000309 9.4e-07 57.8 88 33.0
CiPaw.03G153700 Carya illinoinensis HOM05D009850 ORTHO05D011981 9.4e-07 57.8 46 47.8
DCAR_026902 Daucus carota HOM05D001383 ORTHO05D000309 9.4e-07 57.8 99 37.4
Lsat_1_v5_gn_5_71080 Lactuca sativa HOM05D021679 ORTHO05D022849 9.4e-07 57.8 88 39.8
Eucgr.A00957 Eucalyptus grandis HOM05D007774 ORTHO05D000309 1.2e-06 57.4 59 47.5
Eucgr.E03477 Eucalyptus grandis HOM05D001383 ORTHO05D000309 1.2e-06 57.4 60 46.7
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.2e-06 57.4 63 44.4
Lj5P426T12 Lonicera japonica HOM05D008126 ORTHO05D000309 1.2e-06 57.4 120 35.8
Nitab4.5_0000006g0600 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.2e-06 57.4 76 42.1
SGA_v2.0_scaffold203G41556 Striga asiatica HOM05D011630 ORTHO05D014269 1.2e-06 57.4 156 29.5
Cfa008132 Carpinus fangiana HOM05D016218 ORTHO05D000309 1.6e-06 57.0 64 35.9
Cfa010532 Carpinus fangiana HOM05D016218 ORTHO05D000309 1.6e-06 57.0 80 33.8
Eucgr.C02166 Eucalyptus grandis HOM05D001383 ORTHO05D000309 1.6e-06 57.0 117 30.8
Eucgr.J01886 Eucalyptus grandis HOM05D001383 ORTHO05D000309 1.6e-06 57.0 60 46.7
Eucgr.L00016 Eucalyptus grandis HOM05D001383 ORTHO05D000309 1.6e-06 57.0 60 46.7
Hma1.2p1_0470F.1_g159220 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.6e-06 57.0 116 33.6
Lsat_1_v5_gn_9_106221 Lactuca sativa HOM05D011072 ORTHO05D012603 1.6e-06 57.0 91 36.3
EL10Ac2g02861 Beta vulgaris HOM05D008388 ORTHO05D000309 2.1e-06 56.6 79 35.4
EL10Ac3g07074 Beta vulgaris HOM05D008388 ORTHO05D000309 2.1e-06 56.6 85 35.3
Lsat_1_v5_gn_3_138160 Lactuca sativa HOM05D009585 ORTHO05D000309 2.1e-06 56.6 67 44.8
CiPaw.14G106100 Carya illinoinensis HOM05D009850 ORTHO05D011981 2.7e-06 56.2 62 43.5
Hma1.2p1_1407F.1_g281470 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.7e-06 56.2 103 34.0
Lj4P203T20 Lonicera japonica HOM05D008126 ORTHO05D000309 2.7e-06 56.2 65 46.2
Lj6P58T20 Lonicera japonica HOM05D008126 ORTHO05D000309 2.7e-06 56.2 65 47.7
Peaxi162Scf00723g00110 Petunia axillaris HOM05D001383 ORTHO05D000309 2.7e-06 56.2 47 48.9
SGA_v2.0_scaffold22G09678 Striga asiatica HOM05D011630 ORTHO05D014269 2.7e-06 56.2 129 34.1
CiPaw.01G061900 Carya illinoinensis HOM05D009850 ORTHO05D011981 3.6e-06 55.8 102 35.3
CiPaw.01G105900 Carya illinoinensis HOM05D009850 ORTHO05D011981 3.6e-06 55.8 70 38.6
CiPaw.07G027100 Carya illinoinensis HOM05D009850 ORTHO05D011981 3.6e-06 55.8 68 41.2
CiPaw.16G049900 Carya illinoinensis HOM05D009850 ORTHO05D011981 3.6e-06 55.8 98 35.7
Eucgr.D00391 Eucalyptus grandis HOM05D001383 ORTHO05D000309 3.6e-06 55.8 60 46.7
Hma1.2p1_0128F.1_g059990 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.6e-06 55.8 60 43.3
Hma1.2p1_1219F.1_g267960 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.6e-06 55.8 84 33.3
Solyc09g072730.2 Solanum lycopersicum HOM05D009408 ORTHO05D000309 3.6e-06 55.8 107 28.0
Solyc10g055427.1 Solanum lycopersicum HOM05D009408 ORTHO05D000309 3.6e-06 55.8 107 28.0
SGA_v2.0_scaffold38G14998 Striga asiatica HOM05D011630 ORTHO05D014269 3.6e-06 55.8 91 37.4
CiPaw.13G085700 Carya illinoinensis HOM05D009850 ORTHO05D011981 4.7e-06 55.5 64 43.8
Eucgr.H02671 Eucalyptus grandis HOM05D001383 ORTHO05D000309 4.7e-06 55.5 120 30.8
Hma1.2p1_0283F.1_g113450 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.7e-06 55.5 60 43.3
Lj2P1096T11 Lonicera japonica HOM05D008126 ORTHO05D000309 4.7e-06 55.5 120 34.2
Lj3P238T23 Lonicera japonica HOM05D008126 ORTHO05D000309 4.7e-06 55.5 59 49.2
SGA_v2.0_scaffold217G42455 Striga asiatica HOM05D011630 ORTHO05D014269 4.7e-06 55.5 150 31.3
SGA_v2.0_scaffold263G45986 Striga asiatica HOM05D011630 ORTHO05D014269 4.7e-06 55.5 150 31.3
CiPaw.01G217800 Carya illinoinensis HOM05D009850 ORTHO05D011981 6.1e-06 55.1 64 43.8
Eucgr.A01387 Eucalyptus grandis HOM05D001383 ORTHO05D000309 6.1e-06 55.1 60 46.7
Peaxi162Scf00562g00008 Petunia axillaris HOM05D004040 ORTHO05D000309 6.1e-06 55.1 49 49.0
Peaxi162Scf01167g00009 Petunia axillaris HOM05D004040 ORTHO05D000309 6.1e-06 55.1 49 49.0
Lsat_1_v5_gn_2_22921 Lactuca sativa HOM05D021679 ORTHO05D022849 7.9e-06 54.7 85 38.8
Lj9P734T4 Lonicera japonica HOM05D008126 ORTHO05D000309 7.9e-06 54.7 65 46.2
Peaxi162Scf00914g00516 Petunia axillaris HOM05D004040 ORTHO05D000309 7.9e-06 54.7 74 37.8


User provided reference genes

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