Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 5.2e-128 461.1 236 100.0
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 5.8e-127 457.6 236 98.7
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 5.8e-127 457.6 236 98.3
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 5.6e-122 441.0 236 94.9
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.6e-119 432.2 236 92.8
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 2.2e-118 429.1 236 91.5
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 3.8e-118 428.3 236 91.5
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 6.4e-118 427.6 236 91.9
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.4e-117 426.4 236 91.1
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.4e-117 426.4 236 91.1
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.3e-115 419.9 236 91.9
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 1.3e-113 413.3 236 88.1
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 7.6e-111 404.1 236 84.7
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-109 400.2 224 91.1
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 8.7e-107 390.6 236 80.9
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 2.4e-104 382.5 233 79.4
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 6.4e-102 374.4 233 78.5
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 6.4e-102 374.4 236 77.5
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.4e-101 373.2 236 78.0
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 1.9e-101 372.9 236 77.5
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 4.2e-101 371.7 233 77.7
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 5.4e-101 371.3 236 78.4
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 7.1e-101 370.9 236 78.4
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 9.3e-101 370.5 236 75.8
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 1.6e-100 369.8 236 76.3
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.7e-100 369.0 233 76.8
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 3.5e-100 368.6 236 75.0
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 3.5e-100 368.6 236 75.8
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 3.5e-100 368.6 233 76.4
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 3.5e-100 368.6 236 76.3
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 4.6e-100 368.2 233 76.8
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 7.9e-100 367.5 236 76.3
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.0e-99 367.1 236 74.6
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 1.3e-99 366.7 236 76.3
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 1.8e-99 366.3 236 75.4
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 2.3e-99 365.9 236 75.8
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 2.3e-99 365.9 236 75.8
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 3.0e-99 365.5 236 75.4
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 3.0e-99 365.5 236 75.4
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.0e-99 365.5 236 75.0
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 3.9e-99 365.2 233 76.4
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 3.9e-99 365.2 237 77.6
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 5.1e-99 364.8 236 76.7
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 5.1e-99 364.8 236 76.3
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 7.4e-98 360.9 236 75.0
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 9.6e-98 360.5 236 74.6
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.3e-97 360.1 236 74.2
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 2.8e-97 359.0 233 75.5
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 2.8e-97 359.0 238 75.6
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 3.7e-97 358.6 234 73.5
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 4.8e-97 358.2 238 74.4
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 6.2e-97 357.8 236 75.0
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 1.8e-96 356.3 236 74.6
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 9.0e-96 354.0 237 75.1
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 2.0e-95 352.8 229 75.5
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 4.5e-95 351.7 236 72.0
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 5.8e-95 351.3 236 72.5
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 3.8e-94 348.6 236 74.2
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 6.5e-94 347.8 233 73.0
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.4e-93 346.7 234 75.2
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.9e-93 346.3 260 66.9
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 4.2e-93 345.1 240 73.3
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 5.5e-93 344.7 282 63.1
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 7.1e-93 344.4 236 72.9
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.2e-92 343.6 236 71.2
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.7e-92 342.4 233 71.2
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 4.6e-92 341.7 234 72.6
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 6.0e-92 341.3 238 72.3
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 7.9e-92 340.9 238 71.8
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 3.0e-91 339.0 303 59.1
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 6.7e-91 337.8 232 72.4
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 7.4e-90 334.3 236 66.1
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 1.3e-89 333.6 210 80.0
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.8e-89 331.6 236 72.0
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 6.2e-89 331.3 238 69.7
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.1e-88 330.5 228 70.2
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.1e-88 330.5 230 71.7
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 1.8e-88 329.7 201 79.1
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.8e-88 329.7 201 79.1
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 2.0e-87 326.2 272 61.8
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 5.0e-86 321.6 201 78.1
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 2.5e-85 319.3 206 75.7
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 3.2e-85 318.9 233 65.7
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.2e-85 318.9 236 65.3
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.2e-84 317.0 230 69.6
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.2e-84 317.0 236 69.9
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 3.5e-84 315.5 239 66.9
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 6.1e-84 314.7 205 76.6
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 7.9e-84 314.3 234 70.5
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 7.9e-84 314.3 234 70.5
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 1.8e-83 313.2 223 70.0
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 1.8e-83 313.2 223 70.0
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 3.0e-83 312.4 223 70.9
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 3.9e-83 312.0 223 69.5
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 5.1e-83 311.6 220 70.5
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 6.7e-83 311.2 223 70.4
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 6.7e-83 311.2 260 62.7
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.9e-82 309.7 208 72.6
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 5.7e-82 308.1 199 76.4
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 9.7e-82 307.4 211 73.5
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 1.1e-80 303.9 201 73.1
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.4e-80 303.5 233 62.7
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.5e-79 300.1 225 66.7
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.9e-79 298.1 218 67.9
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 5.9e-79 298.1 187 76.5
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 6.5e-78 294.7 196 71.4
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 1.2e-76 290.4 166 81.3
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 6.1e-76 288.1 190 76.3
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.9e-75 285.4 235 62.6
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 8.2e-73 277.7 167 79.0
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.8e-72 276.6 202 70.3
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 7.7e-71 271.2 232 56.5
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 1.7e-70 270.0 166 80.7
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 5.0e-70 268.5 225 56.0
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.2e-69 265.8 188 68.1
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.5e-66 256.9 230 59.6
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 4.4e-66 255.4 230 53.9
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.3e-65 253.8 220 52.7
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.0e-63 246.5 237 57.8
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 6.5e-62 241.5 147 79.6
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 1.5e-61 240.4 151 76.8
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.9e-61 240.0 219 53.9
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.2e-61 238.8 201 62.7
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 1.8e-59 233.4 225 53.3
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 9.7e-58 227.6 135 83.7
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 2.8e-57 226.1 135 84.4
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 1.0e-54 217.6 236 57.2
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 5.7e-50 201.8 173 56.6
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 1.7e-49 200.3 126 77.8
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 7.2e-45 184.9 236 45.8
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 1.8e-43 180.3 233 44.2
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 2.2e-41 173.3 104 79.8
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.4e-40 169.9 106 75.5
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 5.9e-39 165.2 106 76.4
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 2.5e-37 159.8 102 75.5
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 5.6e-37 158.7 112 67.9
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 2.0e-34 150.2 210 40.5
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 7.5e-34 148.3 262 38.2
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 5.0e-30 135.6 142 49.3
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 2.1e-28 130.2 78 79.5
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 4.7e-28 129.0 225 34.2
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 7.8e-23 111.7 224 34.8
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 7.8e-23 111.7 224 34.8
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 2.5e-21 106.7 106 56.6
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 1.8e-19 100.5 68 73.5
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.5e-18 97.4 74 62.2
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 2.4e-16 90.1 49 85.7
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 6.0e-15 85.5 49 79.6
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 1.3e-14 84.3 51 74.5
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 8.6e-14 81.6 195 29.2
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.9e-13 80.5 53 69.8
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.1e-12 77.0 89 48.3
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 8.1e-12 75.1 52 67.3
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 1.4e-08 64.3 50 58.0
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 1.9e-08 63.9 46 69.6
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 9.2e-08 61.6 56 51.8
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.1e-07 60.5 44 61.4


User provided reference genes

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